Gene Information

Name : UCYN_09310 (UCYN_09310)
Accession : YP_003421993.1
Strain : Cyanobacterium sp. UCYN-A
Genome accession: NC_013771
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1067938 - 1068669 bp
Length : 732 bp
Strand : -
Note : PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal

DNA sequence :
TTGGAAACACATAAAGAGAAAATTTTAGTAGTTGACGATGAGGCAAGTATACGTCGTATTTTAGAAACTCGTCTTTCCAT
GATTGGATATGATGTTGTAACAGCTGCTGATGGAGAAGAAGCTTTAGAAATTTTTTATGATTCAGTACCTGATTTGGTAG
TTTTAGACGTTATGATGCCGAAGCTAGATGGATATGGAGTATGTCAAGAATTGCGAAAAGAATCAGATATTCCTATCATA
ATGCTGACAGCTCTGGGAGATGTTGCTGATCGTATTACAGGATTAGAGCTAGGAGCCGATGACTATGTGGTTAAACCTTT
TTCACCAAAAGAGCTAGAAGCAAGAATTCGTTCTGTCTTAAGAAGAGTGGAGAAAGGCAGTAACCCAGGAATTCCTAATT
CCGGAGTAATCTCTATTGCTTCAGTAAAAATTGATACAAATAAACGTCAAGTTTATAAAGGCGATGAGCGCATACGTTTA
ACAGGAATGGAATTTAGTTTATTAGAATTACTAGTAGGTTGTTCTGGAGAACCTTTTTCTCGCTCAGAAATTTTACAAGA
AGTGTGGGGATATACTCCAGAGCGTCACGTAGATACCAGAGTAGTAGATGTTCATATTTCTCGCTTGAGAGCAAAGTTAG
AAGATGATCCCAGTAATCCTGAACTAATATTAACAGCAAGGGGTACTGGATATCTCTTCCAACGTATTTTAGAACCTGGA
GAAGAATTGTAA

Protein sequence :
METHKEKILVVDDEASIRRILETRLSMIGYDVVTAADGEEALEIFYDSVPDLVVLDVMMPKLDGYGVCQELRKESDIPII
MLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVEKGSNPGIPNSGVISIASVKIDTNKRQVYKGDERIRL
TGMEFSLLELLVGCSGEPFSRSEILQEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLFQRILEPG
EEL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 8e-30 42
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 5e-29 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
UCYN_09310 YP_003421993.1 winged helix family two component transcriptional regulator NC_002952.2859905.p0 Protein 3e-45 49
UCYN_09310 YP_003421993.1 winged helix family two component transcriptional regulator NC_002745.1124361.p0 Protein 5e-45 49
UCYN_09310 YP_003421993.1 winged helix family two component transcriptional regulator NC_009782.5559369.p0 Protein 5e-45 49
UCYN_09310 YP_003421993.1 winged helix family two component transcriptional regulator NC_002951.3237708.p0 Protein 5e-45 49
UCYN_09310 YP_003421993.1 winged helix family two component transcriptional regulator NC_003923.1003749.p0 Protein 4e-45 49
UCYN_09310 YP_003421993.1 winged helix family two component transcriptional regulator NC_002758.1121668.p0 Protein 5e-45 49
UCYN_09310 YP_003421993.1 winged helix family two component transcriptional regulator NC_007622.3794472.p0 Protein 3e-45 49
UCYN_09310 YP_003421993.1 winged helix family two component transcriptional regulator NC_009641.5332272.p0 Protein 5e-45 49
UCYN_09310 YP_003421993.1 winged helix family two component transcriptional regulator NC_013450.8614421.p0 Protein 5e-45 49
UCYN_09310 YP_003421993.1 winged helix family two component transcriptional regulator NC_007793.3914279.p0 Protein 5e-45 49
UCYN_09310 YP_003421993.1 winged helix family two component transcriptional regulator AE000516.2.gene3505. Protein 2e-41 47
UCYN_09310 YP_003421993.1 winged helix family two component transcriptional regulator HE999704.1.gene2815. Protein 8e-41 46
UCYN_09310 YP_003421993.1 winged helix family two component transcriptional regulator BAC0125 Protein 3e-37 45
UCYN_09310 YP_003421993.1 winged helix family two component transcriptional regulator NC_012469.1.7685629. Protein 1e-40 45
UCYN_09310 YP_003421993.1 winged helix family two component transcriptional regulator CP000034.1.gene3671. Protein 2e-38 43
UCYN_09310 YP_003421993.1 winged helix family two component transcriptional regulator BAC0083 Protein 2e-34 42
UCYN_09310 YP_003421993.1 winged helix family two component transcriptional regulator NC_003923.1003417.p0 Protein 2e-35 41
UCYN_09310 YP_003421993.1 winged helix family two component transcriptional regulator NC_013450.8614146.p0 Protein 2e-35 41
UCYN_09310 YP_003421993.1 winged helix family two component transcriptional regulator NC_002951.3238224.p0 Protein 2e-35 41
UCYN_09310 YP_003421993.1 winged helix family two component transcriptional regulator NC_007793.3914065.p0 Protein 2e-35 41
UCYN_09310 YP_003421993.1 winged helix family two component transcriptional regulator NC_002758.1121390.p0 Protein 2e-35 41
UCYN_09310 YP_003421993.1 winged helix family two component transcriptional regulator NC_010079.5776364.p0 Protein 2e-35 41
UCYN_09310 YP_003421993.1 winged helix family two component transcriptional regulator NC_002952.2859858.p0 Protein 2e-35 41
UCYN_09310 YP_003421993.1 winged helix family two component transcriptional regulator NC_007622.3794948.p0 Protein 2e-35 41
UCYN_09310 YP_003421993.1 winged helix family two component transcriptional regulator CP000675.2.gene1535. Protein 4e-38 41
UCYN_09310 YP_003421993.1 winged helix family two component transcriptional regulator BAC0197 Protein 8e-32 41
UCYN_09310 YP_003421993.1 winged helix family two component transcriptional regulator CP001485.1.gene721.p Protein 7e-34 41
UCYN_09310 YP_003421993.1 winged helix family two component transcriptional regulator CP001918.1.gene5135. Protein 5e-25 41
UCYN_09310 YP_003421993.1 winged helix family two component transcriptional regulator CP000647.1.gene4257. Protein 4e-29 41
UCYN_09310 YP_003421993.1 winged helix family two component transcriptional regulator NC_002695.1.915041.p Protein 4e-28 41
UCYN_09310 YP_003421993.1 winged helix family two component transcriptional regulator CP001138.1.gene4273. Protein 2e-28 41
UCYN_09310 YP_003421993.1 winged helix family two component transcriptional regulator BAC0533 Protein 4e-29 41
UCYN_09310 YP_003421993.1 winged helix family two component transcriptional regulator CP004022.1.gene3215. Protein 1e-33 41
UCYN_09310 YP_003421993.1 winged helix family two component transcriptional regulator CP000034.1.gene3834. Protein 4e-28 41
UCYN_09310 YP_003421993.1 winged helix family two component transcriptional regulator BAC0638 Protein 2e-28 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
UCYN_09310 YP_003421993.1 winged helix family two component transcriptional regulator VFG1390 Protein 4e-39 43
UCYN_09310 YP_003421993.1 winged helix family two component transcriptional regulator VFG0596 Protein 4e-30 42
UCYN_09310 YP_003421993.1 winged helix family two component transcriptional regulator VFG1389 Protein 1e-31 42