|
Name : UCYN_11390 (UCYN_11390) Accession : YP_003422189.1 Strain : Cyanobacterium sp. UCYN-A Genome accession: NC_013771 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase (class II) Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : - Position : 1281844 - 1283388 bp Length : 1545 bp Strand : - Note : PFAM: OB-fold nucleic acid binding domain; tRNA synthetases class II (D, K and N); TIGRFAM: lysyl-tRNA synthetase-related protein GenX; lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial DNA sequence : ATGTCCTTTAATTCATCGCAACAAGAAGCTCAATTTAATTCCGGATTACAAGAAATTCGTGCTACACGCCTTGCAAAGGT AGAAGAGCTAAAAAAGCTAGGTTTAGTTCCTTATGCTTATCAATGGAAATCTACTCATAATGCTGCTCATCTACAGAAAA CTTATGTTGATTTAGGCGAAGGAGAAGAACTAGACAAAGAAGTCTCACTTGCTGGAAGAATTATGGCTCGTAGAGTTTTT GGAAAGCTTGCTTTTTTTACTCTACAAGATGAAACAGGAAATATTCAGCTATATCTTGATAAAAAAATTATTCAAGATAA TATGAGTAATATAGAAAACCCTTTTAATCATCTCAAAAAACTCATAGATACTGGTGATATTATTGGAGTTACAGGGAGTA TAAAAAAGACCGAAAAAGGTGAACTCTCTATTAAAGTGAAAACATATGAAATTTTAACTAAATCATTATTACCACTTCCT GATAAATGGCATGGTTTAACTGACAGAGAAAAACGTTACCGCCAAAGATATATTGACTTAATAGTTAACCCTAGTACAAG GGAGACTTTTCGTTGCCGTTCAAAAGTAATATCCTCTATTCGTAAATTTTTAGAAGAGAGGGGATTTCTTGAGATAGAAA CACCTGTTTTGCAATCTGAAGCAGGCGGAGCAGATGCAAGACCTTTTATAACGCATCACAATACATTAAATATGGATCTC TATTTAAGGATTGCGACAGAATTACATCTAAAAAGACTAATTGTAGGTGGCTTTGAAAAAGTATTTGAGATAGGTAGAAT TTTTCGTAACGAAGGAATTTCAACTAAACATAATCCAGAATTTACTTCCATTGAGATTTACGAAGCATATTCAGATTACT ATGGCATGATGGAGTTAACAGAAAAAATTATCACCAGGATTATTCATGATATAGGTCAAGATACAATTATTGAATGTCAA GGACAAAAAATTAATTTTTCGCAACCTTGGCGAAAAATTACTATGAATGAAATAGTTAAAGAAAAAAATAATTTAGATTT CGAAAGTTTTAAAACTTTCGAAGAAGCCAAAATAGCAGTCAACAAGCTAGGAATACAAATCCCGGAAGCCTGTCGGACTA TAGGAAAGTTACTTAATGAAGTTTTTGAGCAAACTGTAGAAGAGACAATAATTCAACCTACATTTATTTTAGATTTTCCT GTCGAAATTTCTCCATTAGCAAAACCTCATCGTACAAAAGGAAATGTGGTTGAAAGATTTGAACTTTATATCATGGGACG AGAATTAGCAAATAGTTTTTCTGAATTAACCGACCCTATTGACCAAAGAGAAAGGCTAGAAAAACAAGCTATTAAAAAAG CAGCAGGAGACTTAGAAGCTCACAATATAGATGAAGATTTTTTAACAGCTTTAGAATATGGAATGCCTCCTACTGGAGGA TTGGGAATCGGTATTGATCGACTCATAATGCTACTAACAAATTCTGCAAGTATAAGAGATGTAATTGCTTTTCCATTACT AAAAAACCAAAATGTAGAAAGCTAG Protein sequence : MSFNSSQQEAQFNSGLQEIRATRLAKVEELKKLGLVPYAYQWKSTHNAAHLQKTYVDLGEGEELDKEVSLAGRIMARRVF GKLAFFTLQDETGNIQLYLDKKIIQDNMSNIENPFNHLKKLIDTGDIIGVTGSIKKTEKGELSIKVKTYEILTKSLLPLP DKWHGLTDREKRYRQRYIDLIVNPSTRETFRCRSKVISSIRKFLEERGFLEIETPVLQSEAGGADARPFITHHNTLNMDL YLRIATELHLKRLIVGGFEKVFEIGRIFRNEGISTKHNPEFTSIEIYEAYSDYYGMMELTEKIITRIIHDIGQDTIIECQ GQKINFSQPWRKITMNEIVKEKNNLDFESFKTFEEAKIAVNKLGIQIPEACRTIGKLLNEVFEQTVEETIIQPTFILDFP VEISPLAKPHRTKGNVVERFELYIMGRELANSFSELTDPIDQRERLEKQAIKKAAGDLEAHNIDEDFLTALEYGMPPTGG LGIGIDRLIMLLTNSASIRDVIAFPLLKNQNVES |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 2e-109 | 48 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| UCYN_11390 | YP_003422189.1 | lysyl-tRNA synthetase (class II) | VFG1668 | Protein | 9e-110 | 48 |
