Gene Information

Name : LM5923_2336 (LM5923_2336)
Accession : YP_003417539.1
Strain : Listeria monocytogenes 08-5923
Genome accession: NC_013768
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 2353590 - 2354369 bp
Length : 780 bp
Strand : -
Note : -

DNA sequence : 
ATGGAAGTAAGGGACGTTAATTTTAGTTATAATGGAACCGATGCAATTTTGAAAAATGTCTCATTTACTATCCAGAAGAA
TAAAATCAATACGATTGTTGGGCCAAATGGTAGTGGAAAATCTACCTTATTAGAAATTTTGGCTAGACTCCTTTCACCTA
ATTCTGGGGATGTTTTACTGGAAGGAAAATCGATTTTTGAATGGAAAGCAAAAGAATTTGCGCAAAATGTGGCGATTGTT
CATCAAAGTAACGTTCTTCCGAATGAACTAATGGTGAAGGAATTGCTTTACTTTGGTCGTCTACCTTATAAAAATTGGCG
AATGACTCGGACGAAGGAGGATGATCTAGCTGTTGAGCGGGCTTTGATGCAAACGGAGCTAACTGAAAAAGCAGAGAAAT
TTGTTGATAGTCTTTCTGGAGGAGAGCGGCAACGTGTTTTTATAGCAACAGCATTAGTTCAGGATACACCTATTTTGCTG
TTGGACGAGCCCACGACATTTCTAGACATGTATTTTCAACTAGAAATTTTAGAATTAGTGAAACGATTAAATCAAGAAGA
AAATTTGACTATTGTAATGATTTTGCATGACTTAAACCAAGCACTGATGTATAGTGACCATTTGATTGTGATGAAAAATG
GGGAAGTGGTTGCAAAAGGAGAACCAGAAGAATTACTAACAACGGATTTGATTGCTGAAACTTATGGTGTAGTTGCAGAT
GTTTTAAACGATGCGAACAACGGGAAATACATTGTTCCTCAAAGACGAAAGGAGTTTTAG

Protein sequence : 
MEVRDVNFSYNGTDAILKNVSFTIQKNKINTIVGPNGSGKSTLLEILARLLSPNSGDVLLEGKSIFEWKAKEFAQNVAIV
HQSNVLPNELMVKELLYFGRLPYKNWRMTRTKEDDLAVERALMQTELTEKAEKFVDSLSGGERQRVFIATALVQDTPILL
LDEPTTFLDMYFQLEILELVKRLNQEENLTIVMILHDLNQALMYSDHLIVMKNGEVVAKGEPEELLTTDLIAETYGVVAD
VLNDANNGKYIVPQRRKEF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 1e-45 46
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 2e-44 44
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 2e-44 44
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 2e-44 44
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 2e-44 44
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 7e-45 42
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 3e-45 42
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 3e-45 42
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 1e-42 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LM5923_2336 YP_003417539.1 hypothetical protein BAC0164 Protein 7e-43 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LM5923_2336 YP_003417539.1 hypothetical protein VFG1042 Protein 7e-43 41
LM5923_2336 YP_003417539.1 hypothetical protein VFG0925 Protein 2e-43 41