Gene Information

Name : pdp (LM5923_2146)
Accession : YP_003417349.1
Strain : Listeria monocytogenes 08-5923
Genome accession: NC_013768
Putative virulence/resistance : Unknown
Product : pyrimidine-nucleoside phosphorylase
Function : -
COG functional category : F : Nucleotide transport and metabolism
COG ID : COG0213
EC number : -
Position : 2151643 - 2152944 bp
Length : 1302 bp
Strand : -
Note : -

DNA sequence :
ATGAGAATGGTGGATATTATTTCCAAGAAAAGGGACGGCAAAGCTTTATCAACAGAAGAAATTCAGTTTTTCATTGATGG
CTATACAAATGGAGAAATTCCGGATTATCAAGCAAGTGCTCTAGCCATGGCAATCTTTTTCCAAGATATGAATGATCAAG
AACGCGCGGATTTAACAATGGCAATGGTTGGCTCTGGCGATACGATTGACCTATCTGCAATTGAAGGAATCAAAGTCGAC
AAACATAGTACTGGCGGTGTTGGCGATACGACGACACTTGTTCTTGCTCCACTTGTAGCAGCAGTTGGCGTACCGGTTGC
AAAAATGTCTGGACGCGGATTAGGTCACACAGGTGGCACAATTGATAAACTAGAATCTATCGAAGGCTTCCACATTGAAC
TGGATAAAAAAGATTTCATTGACCTAGTAAACCGCGACAAAGTAGCGGTTATTGGTCAATCAGGTAACCTTACACCAGCA
GATAAAAAAATGTACGCGCTTCGTGATGTAACAGGAACCGTGAACTCAATACCACTAATTGCAAGCTCTATTATGAGTAA
AAAAATCGCAGCAGGCGCAGATGCAATCGTACTTGATGTAAAAACAGGTGCCGGTGCATTTATGAAAACCGACGAGGACG
CCGAAAACCTAGCACATGCAATGGTTCGCATCGGTAATAACGTTGGTAGAAATACAATGGCAGTCATTTCTGATATGTCC
CAACCACTTGGCGAAGCAATCGGAAATGCTTTAGAAGTAAAAGAAGCCATCGATACATTAAAAGGCCAAGGACCAGCGGA
CTTAACAGAATTAGTTCTTGTGCTTGGTAGCCAAATGGTCGTACTTGCCAAACAAGCGGAAACACTCGACGAAGCCCGCG
CTAAACTAATCGAAGTAATCGAAAACGGTGCAGCACTTGAGAAATTCAAAACATTCCTTTCCAATCAAGGTGGCGATGCA
AGCATTGTTGATCACCCAGAAAAACTTCCGCAAGCAAAATACCAAATCGAAGTACCCGCTAAAACATCTGGCTTCGTAAG
TCAAATCGTTGCCGATGAAATTGGCATTGCTGCAATGATCCTAGGCGCCGGTCGCGCAACGAAAGAAGACGAAATCAATC
TAGCAGTAGGTTTAATGCTACGTAAAAAAGTGGGCGATGCTGTTAAGGAAGGCGAATCACTCGTAACGATTTTCGCTGAC
CAAGAAGATGTCGAAAATGTAAAAGCGAAAATCTACGAAAACATTCAAATTTCCGACCATGCAATAGCGCCAACCCTTGT
TCATAAAGTTATTACAGAATAA

Protein sequence :
MRMVDIISKKRDGKALSTEEIQFFIDGYTNGEIPDYQASALAMAIFFQDMNDQERADLTMAMVGSGDTIDLSAIEGIKVD
KHSTGGVGDTTTLVLAPLVAAVGVPVAKMSGRGLGHTGGTIDKLESIEGFHIELDKKDFIDLVNRDKVAVIGQSGNLTPA
DKKMYALRDVTGTVNSIPLIASSIMSKKIAAGADAIVLDVKTGAGAFMKTDEDAENLAHAMVRIGNNVGRNTMAVISDMS
QPLGEAIGNALEVKEAIDTLKGQGPADLTELVLVLGSQMVVLAKQAETLDEARAKLIEVIENGAALEKFKTFLSNQGGDA
SIVDHPEKLPQAKYQIEVPAKTSGFVSQIVADEIGIAAMILGAGRATKEDEINLAVGLMLRKKVGDAVKEGESLVTIFAD
QEDVENVKAKIYENIQISDHAIAPTLVHKVITE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
deoA YP_005163381.1 Thymidine phosphorylase Not tested Not named Protein 2e-69 46