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Name : inlC2 (LM5578_0307) Accession : YP_003412425.1 Strain : Listeria monocytogenes 08-5578 Genome accession: NC_013766 Putative virulence/resistance : Virulence Product : internalin H Function : - COG functional category : S : Function unknown COG ID : COG4886 EC number : - Position : 310334 - 311980 bp Length : 1647 bp Strand : + Note : - DNA sequence : ATGAAAAAACGGTGGAATTCAGTATTCAAACTAGTTTTAATGGTAACTGCTATTCTCGGGTTTAGCCTATATGTAACGAC AAGCCAAGGTGTGGAGGTTCGGGCAGAGAGCATCACGCAGCCAACCGCAATTAATGTGATTTTCCCTGATCCAGCTCTTG CGAATGCAATTAAAATAGCGGCTGGAAAATCTAATGTAACAGATACTGTCACGCAAGCGGATTTAGATGGAATAACTACT TTATCAGCATTTGGGACTGGAGTAACAACGATAGAAGGAGTGCAGTACTTAAATAATTTGATAGGGTTAGAACTTAAAGA TAACCAAATAACTGATTTAACTCCTCTTAAAAATTTAACGAAAATAACAGAACTTGAATTATCTGGAAACCCGTTAAAAA ATGTGAGCGCGATTGCTGGGTTACAAAGCATAAAAACGCTAGACCTAACTTCTACGCAAATTACAGATGTGACCCCACTT GCAGGTCTTTCCAATTTGCAGGTATTATATTTGGATCTCAATCAAATAACCAATATAAGCCCGCTTGCAGGACTAACTAA TTTACAATACTTATCAATCGGAAATGCCCAAGTAAGTGATTTAACCCCACTTGCTAATTTATCTAAACTAACTACTTTAA AAGCTGATGATAATAAAATAAGTGATATTTCGCCACTTGCTAGTTTACCTAATCTTATAGAAGTTCATTTGAAAAATAAT CAAATTAGTGATGTTAGCCCACTTGCGAATACTTCAAACTTATTTATTGTCACTTTAACGAATCAAACAATTACCAACCA ACCTGTGTTTTATCAAAATAATCTTGTCGTCCCTAATATAGTAAAAGGTCCTTCTGGCGCGCCTATTGCACCCGCTACTA TTAGTGACAATGGAACATACGCAAGCCCAAATTTAACATGGAATTTAACTAGTTTTATTAATAATGTTAGTTATACTTTT AACCAATCAGTCACTTTCAAAAATACAACAGTTCCGTTTAGTGGGACAGTTACACAACCATTAACAGAAGCTTACACTGC GGTTTTTGACGTGGACGGGAAGCAAACAAGTGTGACAGTCGGCGCGAATGAATTAATTAAAGAACCAACGGCCCCGACGA AAGAAGGTTACACATTCACAGGCTGGTATGATGCAAAAACTGGCGGGAATAAATGGGATTTCGGCGTGGATAAAATGCCC GCAGAAAATATCACGTTGTATGCTCAGTTCACAATTAATAGCTATACTGCCTCATTTGACAATGATGGTAAATTAACGAC TCAAAAAGTCACTTATCAAAGTCTATTAGAAGAACCAGCAGCGCCAACGAAAACAGGTTATACGTTCAAAGGTTGGTATG ATGCTAAAACGGGTGGAACTAAATGGGATTTTGCTACTGGTAAAATGCCGGCGGGAAATATTACACTATATGCCCAATTT ACTAAAAATGATAGCCCAAATCCAAATGATCCAACCCCTAATACCCCAACAGGAAATGGTGATGGTACAAGCAATCCAAG CAATTCAGGAGGCAATACCACACTTCCAACAGCTGGTGACGAAAATACCATGCTTCCGATTTTTATCGGGGTTTTCTTGC TAGGAACAGCAACGCTAATTCTCCGCAAAACAATCAAAGTGAAATAA Protein sequence : MKKRWNSVFKLVLMVTAILGFSLYVTTSQGVEVRAESITQPTAINVIFPDPALANAIKIAAGKSNVTDTVTQADLDGITT LSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLTPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPL AGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNN QISDVSPLANTSNLFIVTLTNQTITNQPVFYQNNLVVPNIVKGPSGAPIAPATISDNGTYASPNLTWNLTSFINNVSYTF NQSVTFKNTTVPFSGTVTQPLTEAYTAVFDVDGKQTSVTVGANELIKEPTAPTKEGYTFTGWYDAKTGGNKWDFGVDKMP AENITLYAQFTINSYTASFDNDGKLTTQKVTYQSLLEEPAAPTKTGYTFKGWYDAKTGGTKWDFATGKMPAGNITLYAQF TKNDSPNPNDPTPNTPTGNGDGTSNPSNSGGNTTLPTAGDENTMLPIFIGVFLLGTATLILRKTIKVK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| inlC2 | AAB67969.1 | internalin | Virulence | Internalin | Protein | 0.0 | 99 |
| inlH | CAA07457.1 | internalin H | Virulence | Internalin | Protein | 0.0 | 98 |
| inlD | CAC20635.1 | internalin D | Virulence | Internalin | Protein | 0.0 | 98 |
| inlE | CAC20636.1 | internalin E | Virulence | Internalin | Protein | 2e-130 | 70 |
| inlE | CAA07458.1 | internalin E | Virulence | Internalin | Protein | 1e-130 | 70 |
| inlE | AAB67971.1 | - | Virulence | Internalin | Protein | 2e-131 | 70 |
| inlD | AAB67970.1 | - | Virulence | Internalin | Protein | 2e-146 | 60 |
| inlG | CAA07456.1 | internalin G | Virulence | Internalin | Protein | 4e-100 | 50 |
| inlF | CAC20634.1 | internalin F | Virulence | Internalin | Protein | 2e-100 | 50 |
