Gene Information

Name : LM5578_2624 (LM5578_2624)
Accession : YP_003414732.1
Strain : Listeria monocytogenes 08-5578
Genome accession: NC_013766
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 2610738 - 2611529 bp
Length : 792 bp
Strand : -
Note : -

DNA sequence : 
ATGAAATCAGCATTAGAACTAAAAAATGTTTCTTTCTCACGTAAAAGAGATTTCGAAATGAAAAATGTGAGCGCGAGCAT
TCCAGAAGGGAAAATCACTACGCTTATCGGTCCAAACGGCTCGGGGAAATCAACTATGTTGCGTTTGATGATGCGTCTTT
TGACACCGGATAGCGGAGAGATTCTCTTAAATGAAAAAAATATTACTGAAATCCCATCTAAAGATTTAGCGAAGAAAATG
ACGATGCTATCACAAGCTCCAGAAGGTTTGGTAGATGTGATGGTGCATGATTTAGTGGCGTATGGCCGTTTGCCGCACCG
AAGCTGGCTCTCCACTTTGCAAGAGGAGGACGAGGCGGTCATTCACTGGGCTATTAAAGTTTGTAACTTAGAAGAACTGG
CTTATCGCCCGCTACATTCGTTATCAGGCGGAGAACGACAACGTGCTTGGCTGGCAATGGCTCTTGCGCAAAAAACACCT
ATTTTATTACTAGATGAGCCCACGACTTATTTAGATATTGCGCATCAACTGGAGCTTTTAGATTTACTCGTGCATTTAAA
TAAAGAATATAATTTAACCATCGTGCTCGTTTTACATGATTTAAATCAGGCAGCAATATACAGTGACCATGTTTTTGTAT
GCGAAAATGGACAATTAGTCAAAGACGGCTCGCCTAGAGAAGTTTTCACGACAGAGCTTCTTCGCGATGTTTTTCATATT
ACGGCGGATATTACCGAAAAAGACGGAAAGCAGCATATTCATCCACTTGCTTCGACTCGTTTTGAATATTAA

Protein sequence : 
MKSALELKNVSFSRKRDFEMKNVSASIPEGKITTLIGPNGSGKSTMLRLMMRLLTPDSGEILLNEKNITEIPSKDLAKKM
TMLSQAPEGLVDVMVHDLVAYGRLPHRSWLSTLQEEDEAVIHWAIKVCNLEELAYRPLHSLSGGERQRAWLAMALAQKTP
ILLLDEPTTYLDIAHQLELLDLLVHLNKEYNLTIVLVLHDLNQAAIYSDHVFVCENGQLVKDGSPREVFTTELLRDVFHI
TADITEKDGKQHIHPLASTRFEY

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 5e-39 48
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 3e-43 48
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 3e-43 48
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 3e-43 48
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 3e-43 48
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 3e-38 47
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 3e-39 46
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 3e-39 46

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LM5578_2624 YP_003414732.1 hypothetical protein BAC0164 Protein 3e-39 48

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LM5578_2624 YP_003414732.1 hypothetical protein VFG1042 Protein 3e-39 48
LM5578_2624 YP_003414732.1 hypothetical protein VFG0925 Protein 2e-34 43