Gene Information

Name : Gobs_3211 (Gobs_3211)
Accession : YP_003410187.1
Strain : Geodermatophilus obscurus DSM 43160
Genome accession: NC_013757
Putative virulence/resistance : Virulence
Product : pyruvate kinase
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG0469
EC number : 2.7.1.40
Position : 3370144 - 3371559 bp
Length : 1416 bp
Strand : -
Note : KEGG: msm:MSMEG_3227 pyruvate kinase; TIGRFAM: pyruvate kinase; PFAM: Pyruvate kinase barrel; HpcH/HpaI aldolase; Pyruvate kinase alpha/beta

DNA sequence :
ATGTCCCGTCGCGCGAAGATCGTCTGCACCCTCGGGCCGGCGACCGGTTCCCTGGAACAGGTCACCGCCCTCGTCGAGTC
GGGGATGGACGTCGCCCGGCTCAACTTCAGCCACGGCGCGCACGCCGACCACGAGCGGGCCTACCGCCTGGTGCGCGAGG
CCTCCGACCGCACCGGTCGCGCCGTCGCCATCCTCGCCGACCTGCAGGGCCCCAAGATCCGCCTCGGCACCTTCGCCGAC
GGCCCGGTCCACTGGGAGACCGGCAGCCGGGTCTGCATCACCGTCGACGACGTCGAGGGCACCGCCGAGCGGGTCTCAAC
CACCTACAAGGGCCTGGCCGCCGACGCGAAGGTCGGCGACCGGCTGCTGGTCGACGACGGCAAGCTGGCGCTGTCGGTCG
TCGCGATCGAGGGCCCGGACGTGTGGTGCCTGGTCGTCGAGGGCGGCGAGGTGTCCAACAACAAGGGCCTGTCGCTGCCG
GGCGTCGCGGTGAGCGTGCCGGCGATGTCGGACAAGGACGAGGAGGACCTCCGCTTCGCCCTGCACATGGGGGTCGACTT
CGTGGCGCTGTCCTTCGTGCGCTCACCGCGCGACATGGAGCTGGTGCGCGACGTCATGCGCCGGGAGGACGTCTCCGTCC
CCGTCATCGCCAAGCTGGAGAAGCCCGAGGCGGTGGAGAACCTCGAGGCGATCGTCGAGGCGTTCGACGGGGTCATGGTC
GCCCGCGGCGACCTGGGCGTGGAGCTGGCGCTGGAGCAGGTGCCACTGGTGCAGAAGCGGGCCGTGCAGGCCGCCCGCGA
GCGCAACAAACCGGTCATCGTGGCCACGCAGATGCTCGAGTCGATGATCACCAACTCGCGGCCCACGCGCGCGGAGGCCT
CCGACGTCGCCAACGCCGTCCTGGACGGCGCGGACGCGGTGATGCTGTCGGGGGAGACCTCCGTGGGCCGCTACCCGATC
GCCGCCGTGCGGACGATGGATCGGATCATCGATGCCGTCGAGAGCGACGCCGTGCGCGTCCCCGAGCTGGTCCGGAAGTC
GCGGTCCCGGTCCGGCGCCATCGTCCGGTCCGCCCGGGACATCGCCGAGTCCCTCGACGTCAAAGCCCTGGCCACCTTCA
CCCAGACCGGCGGCAGCGCCCGGCGGCTGGCCGCGCTGCACCCCCGGATGCCGCTGCTGGCCTTCACCATCGACGGGCGG
GTGCGCAGCCAGCTGGCGCTGTCCTGGGGCGTGGAGACGTTCCTGGTCCCCGCGGTGCAGCACACCGACGACATGGTCCG
GCAGGTGGACTTCTCGCTGCTGTCCATCGGCCGGCTCAAGGAGGGCGACCGGGTCGTCGTCGTGGCCGGCAGCCCCCCGA
ACACCCCGGGGTCGACGAACCTCATCCGGGTCCACGAGGTGGGTACCGACTCGTGA

Protein sequence :
MSRRAKIVCTLGPATGSLEQVTALVESGMDVARLNFSHGAHADHERAYRLVREASDRTGRAVAILADLQGPKIRLGTFAD
GPVHWETGSRVCITVDDVEGTAERVSTTYKGLAADAKVGDRLLVDDGKLALSVVAIEGPDVWCLVVEGGEVSNNKGLSLP
GVAVSVPAMSDKDEEDLRFALHMGVDFVALSFVRSPRDMELVRDVMRREDVSVPVIAKLEKPEAVENLEAIVEAFDGVMV
ARGDLGVELALEQVPLVQKRAVQAARERNKPVIVATQMLESMITNSRPTRAEASDVANAVLDGADAVMLSGETSVGRYPI
AAVRTMDRIIDAVESDAVRVPELVRKSRSRSGAIVRSARDIAESLDVKALATFTQTGGSARRLAALHPRMPLLAFTIDGR
VRSQLALSWGVETFLVPAVQHTDDMVRQVDFSLLSIGRLKEGDRVVVVAGSPPNTPGSTNLIRVHEVGTDS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
STY1744 NP_456147.1 pyruvate kinase Not tested SPI-2 Protein 4e-75 42
pykF YP_216386.1 pyruvate kinase Not tested SPI-2 Protein 1e-75 42
pykF NP_805051.1 pyruvate kinase Not tested SPI-2 Protein 1e-75 42
pykF CAA68205.1 pyruvate kinase like protein Not tested SPI-2 Protein 4e-75 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Gobs_3211 YP_003410187.1 pyruvate kinase VFG0479 Protein 6e-76 42