Gene Information

Name : Gobs_1954 (Gobs_1954)
Accession : YP_003409021.1
Strain : Geodermatophilus obscurus DSM 43160
Genome accession: NC_013757
Putative virulence/resistance : Resistance
Product : ABC transporter
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 2026558 - 2027298 bp
Length : 741 bp
Strand : +
Note : PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: kra:Krad_1084 ABC transporter-related protein

DNA sequence : 
ATGACGCTGCTGACACTGCGCGGTGTCAGCCGCGAGGTCGCGCTGCCCGACGGTGGCGTGCTACCGATCCTCACCGGGGT
CGACCTGGAGGTGGCGCCCGGCGAGCACGTGGCGGTCGTCGGCCGGTCGGGGTCGGGCAAGTCGACGCTGCTCAACCTCC
TCGGCCTGCTCGACACCCCGACCGGCGGGGAGTACCTGCTCGACGGGGAGCCGACCGACGCGCTGGGGGCCCGCCGTCGC
GCGCGGCTCCGCGGCGAGGTGTTCGGCTTCGTCTTCCAGCAGTTCAACCTGCTGCCCCGGCGCACCGCGGAGGAGAACGT
GGCCGCGCCGCTGCTCTACGCCCGCGGCCGGGACTACCTGCGCCGCCGGCGGACGGCGCGCGAGCTGCTCGACCGGGTCG
GCCTGGGCGCCCGCGCCGACACCGTCCCCGAGCGGCTCTCCGGCGGTGAGCAGCAGCGGGTCGCGATCGCGCGGGCGCTG
GTGCGCTCGCCGCGGGTCGTCCTGGCCGACGAGCCCACCGGCGCGCTCGACGTCGAGACCGGTGCGCAGGTCATGGCGCT
GCTGGCCGAGGCCGCCGCGGAGGGGGGCGCCGCGCTGGTCACCATCACCCACGACCTGAACGTCGCCGGGCTGGCCGACC
GCCGCTACCGGCTGGACGCCGGCCGGCTCACGCCGCTGCCCGACCCGGCGCCGACCCTGCCCTCGCCCGCTGCCGCACCC
CTCGAGGGAGCGGTCCCGTGA

Protein sequence : 
MTLLTLRGVSREVALPDGGVLPILTGVDLEVAPGEHVAVVGRSGSGKSTLLNLLGLLDTPTGGEYLLDGEPTDALGARRR
ARLRGEVFGFVFQQFNLLPRRTAEENVAAPLLYARGRDYLRRRRTARELLDRVGLGARADTVPERLSGGEQQRVAIARAL
VRSPRVVLADEPTGALDVETGAQVMALLAEAAAEGGAALVTITHDLNVAGLADRRYRLDAGRLTPLPDPAPTLPSPAAAP
LEGAVP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 8e-16 44
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 8e-16 44
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 8e-16 44
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 7e-16 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Gobs_1954 YP_003409021.1 ABC transporter NC_008702.1.4606598. Protein 3e-16 49
Gobs_1954 YP_003409021.1 ABC transporter NC_012469.1.7686878. Protein 5e-18 46