Gene Information

Name : Gobs_1216 (Gobs_1216)
Accession : YP_003408334.1
Strain : Geodermatophilus obscurus DSM 43160
Genome accession: NC_013757
Putative virulence/resistance : Unknown
Product : Integrase catalytic domain-containing protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 1276511 - 1277446 bp
Length : 936 bp
Strand : -
Note : PFAM: Integrase catalytic region; KEGG: mtc:MT3100 IS6110, transposase

DNA sequence : 
CTGATCGACTACATCGACCAGCACCGCCAGGAGTTCGGAGTCGAGCCGATCTGCCGCGCCCTCACCGAGGCCGGCACCAA
GATCGCTCCGAGCACCTACTACGCCGCGCGCACCCGGCCGCCGTCGGACCGGGCGGTCCGCGACGAGCAGCTCAAGCCCG
AGATCAGGCGGGTCTTCGAGGTCAACCTCGGTGTCTACGGAGTCCGCAAGGTCTGGCGGACGCTGCAGCGTGAAGGCCAC
CGGGTGCCGCGCTGCCAGATCGAGCGGCTGATGCGCGAGCTCGGCCTGGCCGGGGTGGTGCGCGGCAAGGTCCAGCGGAC
CACCGTTCCGGCCGCGACGGTCGACGCCCGCCCCGATGACCTGGTGCAGCGCGTCTTCCGGTCCTCGGCGCCGAACCGGC
TGTGGGTCGCCGACCTGACCTACGTCGCGACCTGGTCGGGCTGGGTGTACGTCGCCTTCGTCATGGACGTCTTTTCCCGC
CGCATCGTCGGCTGGCAGGCCTCCACTTCGCTGCGCACCGATCTGGCCCTCGACGCCCTCGAGCAGGGCCTGTGGACCCG
AGCCCGGGACGAGCAGGAGGTCAGTGGCCTGGTCCATCACTCCGACCGCGGCGTGCAGTACGTCGCGATTCGCTACACCG
AACGCCTCGACGCCGCCGGCGCCGTTCGCTCGGTGGGCAGCAAGGGCGACTCCTACGACAACGCCGCCGCCGAGTCCCTC
ATCGGCCTCTACAAGACCGAGCTCATCCGCCGCCGCGGCCCGTGGCGCGGCCTCGACGATGTCGAGCTGGCCACCCTGGA
GTACGTCGACTGGTTCAACCACCGCCGGCTGCACGGCGCCTGCGGCGACATCCCACCGGTCGAGTTCGAGGACAACTACT
ACCGTTCGATCGCCGGCCTTACCGAGGACTCCCCGGCAGAACCGAGCCTCCACTGA

Protein sequence : 
MIDYIDQHRQEFGVEPICRALTEAGTKIAPSTYYAARTRPPSDRAVRDEQLKPEIRRVFEVNLGVYGVRKVWRTLQREGH
RVPRCQIERLMRELGLAGVVRGKVQRTTVPAATVDARPDDLVQRVFRSSAPNRLWVADLTYVATWSGWVYVAFVMDVFSR
RIVGWQASTSLRTDLALDALEQGLWTRARDEQEVSGLVHHSDRGVQYVAIRYTERLDAAGAVRSVGSKGDSYDNAAAESL
IGLYKTELIRRRGPWRGLDDVELATLEYVDWFNHRRLHGACGDIPPVEFEDNYYRSIAGLTEDSPAEPSLH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL67406.1 putative transposase Not tested PAI II CFT073 Protein 2e-59 57
S4063 NP_839232.1 IS629 orfB Not tested SHI-2 Protein 1e-49 55
Z4334 NP_289559.1 IS629 transposase Not tested OI-122 Protein 4e-50 55
Z1660 NP_287162.1 transposase for IS629 Not tested TAI Protein 3e-66 55
Z1221 NP_286756.1 transposase Not tested TAI Protein 2e-66 55
Z1198 NP_286733.1 transposase Not tested TAI Protein 1e-66 55
Z1638 NP_287141.1 transposase Not tested TAI Protein 1e-66 55
IS629 CAI43840.1 transposase for IS629 Not tested LEE Protein 2e-65 55
c5213 NP_757061.1 transposase IS629 Not tested PAI II CFT073 Protein 1e-67 54
unnamed AAL67398.1 putative transposase Not tested PAI II CFT073 Protein 5e-67 54
ORF_34 AAZ04444.1 putative IS629 transposase Not tested PAI I APEC-O1 Protein 5e-67 54
c5178 NP_757026.1 transposase IS629 Not tested PAI II CFT073 Protein 1e-66 54
APECO1_3499 YP_854312.1 transposase for IS629 Not tested PAI I APEC-O1 Protein 6e-67 54
ECO103_3585 YP_003223443.1 IS629 transposase OrfB Not tested LEE Protein 2e-65 54
c5167 NP_757015.1 transposase IS629 Not tested PAI II CFT073 Protein 3e-48 53
ECO111_3776 YP_003236111.1 putative IS629 transposase OrfB Not tested LEE Protein 6e-68 53
ECO111_3721 YP_003236061.1 putative IS629 transposase OrfB Not tested LEE Protein 6e-68 53
IS629 CAC37926.1 transposase for IS629 Not tested LEE Protein 3e-65 53
IS629 CAI43821.1 transposase for IS629 Not tested LEE Protein 3e-65 53
IS629 CAI43909.1 transposase for IS629 1 Not tested LEE Protein 3e-65 53
unnamed CAD42083.1 hypothetical protein Not tested PAI II 536 Protein 3e-64 52
tnp7109-25 YP_001800853.1 transposase for insertion sequence Not tested Not named Protein 5e-57 48
CDCE8392_1958 YP_005134489.1 transposase-like protein Not tested Not named Protein 4e-45 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Gobs_1216 YP_003408334.1 Integrase catalytic domain-containing protein VFG1602 Protein 2e-64 52