Gene Information

Name : Gobs_1204 (Gobs_1204)
Accession : YP_003408323.1
Strain : Geodermatophilus obscurus DSM 43160
Genome accession: NC_013757
Putative virulence/resistance : Unknown
Product : Integrase catalytic domain-containing protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 1265302 - 1266168 bp
Length : 867 bp
Strand : +
Note : PFAM: Integrase catalytic region; KEGG: mtb:TBMG_03676 transposase

DNA sequence : 
GTGCTCACCGAGCACGGAACGCCGATTGCTCCCAGCACCTTCTACGACGCCCGCGACCGCAGCTGCGCCCGCGCGGAGCG
AGACACCGGCCTCAAGGACGAGATTCGGCGGATGCATCAGGCCAACTACGGCGTCTACGGCGCCCGCAAGGTCTGGCTCG
CGCTCAACCGCGAGGGCATGCCGGTGGCCCGCTGCACCGTCGAGCGGCTCATGCGCCAGCTCGGCCTCGAAGGCGCTCGC
CGCGGCCGCAGGCATCGCACCACGATCGCCGACCCGGGTGCGCCACGGCCGGCCGACCTGGTGCAACGCCGTTTCTCTCC
GGCGCGACCCGATGCCGTGTGGGTCGCCGATTTCACCTACGTGGCGACCTGGTCGGGCACCGTCTACGTCGCCTTCGTCC
TCGACGCGCACTCTCGCCGGATTCTGGGCTGGCGGGCGGCCACCTCGATGCGCACCGAGCTGGTGCTCGAGGCACTCGAG
CAGGCGATCTGGACCCGCACCCAAGAAGGCGTGGACGACCTGTCCGGGCTCGTGTGTCACCACGACGCCGGGTCGCAATA
CACCTCGATTGCGTTCACCGAGCGGCTCGCGGCCGCCGGCGTCGCACCCAGCGTCGGCACCGTCGGCGACGCGCTGGACA
ACGCCCTGGCCGAGAGCCAGATCGGGCTGTTCAAGACCGAGCTGATCCACCGCCGCGGGCCCTGGAGGAACGTCGACGAC
GTCGAGTTGGCCACCCTGGAATGGGTCGACTGGCACAACAACCGGCGGCTGCACACCGCCTGCCACGACCTCACCCCGGT
CGAGTACGAACAGGTCTTCTACGGACAACACCCCGCCCAGCAGGCGGTCGGGGTCTCAACACCGTGA

Protein sequence : 
MLTEHGTPIAPSTFYDARDRSCARAERDTGLKDEIRRMHQANYGVYGARKVWLALNREGMPVARCTVERLMRQLGLEGAR
RGRRHRTTIADPGAPRPADLVQRRFSPARPDAVWVADFTYVATWSGTVYVAFVLDAHSRRILGWRAATSMRTELVLEALE
QAIWTRTQEGVDDLSGLVCHHDAGSQYTSIAFTERLAAAGVAPSVGTVGDALDNALAESQIGLFKTELIHRRGPWRNVDD
VELATLEWVDWHNNRRLHTACHDLTPVEYEQVFYGQHPAQQAVGVSTP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
c5178 NP_757026.1 transposase IS629 Not tested PAI II CFT073 Protein 1e-58 52
unnamed AAL67398.1 putative transposase Not tested PAI II CFT073 Protein 6e-59 52
unnamed AAL67406.1 putative transposase Not tested PAI II CFT073 Protein 6e-56 51
Z1660 NP_287162.1 transposase for IS629 Not tested TAI Protein 3e-58 51
Z1198 NP_286733.1 transposase Not tested TAI Protein 2e-58 51
Z1638 NP_287141.1 transposase Not tested TAI Protein 2e-58 51
IS629 CAI43840.1 transposase for IS629 Not tested LEE Protein 2e-56 51
APECO1_3499 YP_854312.1 transposase for IS629 Not tested PAI I APEC-O1 Protein 4e-59 51
Z1221 NP_286756.1 transposase Not tested TAI Protein 3e-58 51
ORF_34 AAZ04444.1 putative IS629 transposase Not tested PAI I APEC-O1 Protein 3e-59 51
ECO111_3776 YP_003236111.1 putative IS629 transposase OrfB Not tested LEE Protein 3e-58 51
c5213 NP_757061.1 transposase IS629 Not tested PAI II CFT073 Protein 1e-58 51
ECO111_3721 YP_003236061.1 putative IS629 transposase OrfB Not tested LEE Protein 3e-58 51
c5167 NP_757015.1 transposase IS629 Not tested PAI II CFT073 Protein 8e-42 51
Z4334 NP_289559.1 IS629 transposase Not tested OI-122 Protein 6e-48 50
S4063 NP_839232.1 IS629 orfB Not tested SHI-2 Protein 6e-48 50
IS629 CAC37926.1 transposase for IS629 Not tested LEE Protein 2e-56 50
IS629 CAI43821.1 transposase for IS629 Not tested LEE Protein 2e-56 50
IS629 CAI43909.1 transposase for IS629 1 Not tested LEE Protein 2e-56 50
ECO103_3585 YP_003223443.1 IS629 transposase OrfB Not tested LEE Protein 8e-57 50
tnpC AAD44736.1 TnpC Not tested SHI-2 Protein 2e-44 49
unnamed CAD42083.1 hypothetical protein Not tested PAI II 536 Protein 1e-55 49
tnp7109-25 YP_001800853.1 transposase for insertion sequence Not tested Not named Protein 2e-49 45
CDCE8392_1958 YP_005134489.1 transposase-like protein Not tested Not named Protein 2e-30 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Gobs_1204 YP_003408323.1 Integrase catalytic domain-containing protein VFG1602 Protein 5e-56 49