Gene Information

Name : Acfer_0039 (Acfer_0039)
Accession : YP_003397763.1
Strain : Acidaminococcus fermentans DSM 20731
Genome accession: NC_013740
Putative virulence/resistance : Unknown
Product : single-strand binding protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0629
EC number : -
Position : 48815 - 49258 bp
Length : 444 bp
Strand : +
Note : TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: pjd:Pjdr2_6272 single-strand binding protein

DNA sequence : 
ATGAATCGCATTATCTTGTTGGGCCGTCTCGTACGGGATCCGGAAGTCCGGGTTACACCTACGGAAAAAACGGTCTGCAC
CTTTACTCTGGCAGTTGACCGTCCCTTCGCTTCGAAGAACGGCCAGCGGGAAGCGGATTTTATCAACATTGTAACGTGGA
ATAAAACCGCTGAATTATGTGGGAACAGTTTGACCAAGGGTCAGAGAGCTCTGGTGGAAGGGCGTCTGCAGATCCGCAGC
TACGATGGCAAGGACGGGAACAAGCATTACATGACGGAAGTCATTGCGGACCGTGTGGAATTCATCGAGCGGAAGGGCTC
CGGCAATCCTGCCGCAGGCCAGCAGAATCCTCCATCCCAGAATCAGTCCTCTCAGGGCGGCTCCGCCGGTCCCATGGGTG
GCTTTGGCTCTGAAGTAGGTTTTGACGAAGAGATCCCATTCTAA

Protein sequence : 
MNRIILLGRLVRDPEVRVTPTEKTVCTFTLAVDRPFASKNGQREADFINIVTWNKTAELCGNSLTKGQRALVEGRLQIRS
YDGKDGNKHYMTEVIADRVEFIERKGSGNPAAGQQNPPSQNQSSQGGSAGPMGGFGSEVGFDEEIPF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SAOV_1081 YP_005736576.1 ssDNA-binding protein Not tested ¥ÕSa2 Protein 9e-25 57
SAOV_0290 YP_005735807.1 Single-stranded DNA-binding protein, phage associated Not tested ¥ÕSa1 Protein 8e-25 56
SAV0864 NP_371388.1 ssDNA-binding protein Not tested ¥ÕSa1 Protein 1e-24 55
SAOV_1956c YP_005737400.1 Single-stranded DNA-binding protein, phage associated Not tested ¥ÕSa3 Protein 2e-22 55
SH1792 YP_253707.1 single strand DNA binding protein Not tested ¥ÕSh1 Protein 6e-24 54
SEQ_0802 YP_002746140.1 single-strand binding protein Not tested ¥ÕSeq2 Protein 5e-18 47
ef0030 AAM75236.1 EF0030 Not tested Not named Protein 2e-15 41
ssb-3 NP_814291.1 single-strand binding protein Not tested Not named Protein 2e-15 41