Gene Information

Name : Acfer_2015 (Acfer_2015)
Accession : YP_003399677.1
Strain : Acidaminococcus fermentans DSM 20731
Genome accession: NC_013740
Putative virulence/resistance : Virulence
Product : TRAP dicarboxylate transporter subunit DctM
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG1593
EC number : -
Position : 2230154 - 2231452 bp
Length : 1299 bp
Strand : +
Note : TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: pat:Patl_0772 TRAP dicarboxylate transporter, DctM subunit

DNA sequence : 
ATGACTACGAATACAATTATCCTGATGCTCCTTGTTTCCATGCTGGCTCTCTTCCTGCTGAAAGTCCCCGTTTACATCAG
TATGTCCCTGGCAGGATGTGCCGTCCTGGCTACCCGCTTTGGCATGAAATGGAGCCTGCTCAGCCAATATCTTTATACAG
GGGTGGATTCTTTCACACTTCTTTCCATTCCACTGTTCCTGTTGGCCGCCAAAATCATGAATACGGGCAGCATCACCAAA
AAGCTTTTTTCCTTTTGTATGAAAGTTGTCGGCTGGCTGCCTGGTGGTCTTGGCCATGTAAATGTCCTTTGTTCCGTAAT
TTTTGCCGGTATGTCCGGTACAGCAGTTTCTGATGCCGGCGGACTGGGATCCATCGAAATCAAAGCCATGAACGAAAATG
GATTTGATAATGATTTTTCCTGCTGTGTCACAGCGGCATCTTCAACATTGGGACCCATTATCCCCCCTTCCATTCCTCTG
GTTGTCTATGCAACCGTATCTGGAGCTTCCGTAGGTGCCCTGTTTATGGCTGGAATCATCCCTGGCCTGGTCATGGCCAT
TTTGATGATGGTACTGGTCAGTGCTTATGCCATTCTACGGCACTATCCCCGTACCAAATTTCCCTCTGGAGGAGAATTTT
TTACCGCTCTTAAAGACGGATTTCTCCCGCTGATGGCTCCTGTTATCCTGTTGGTAGGAATTTACGGCGGTGTCTTCACC
CCTACAGAAAGTGCCGCCATTGTGGTTTGCTACAGCCTGTTCCTGGAAATCTGCATTTATCGTGAACTGACACTGGAAAA
ATTTATTTCCATCCTGAAAGAAACCTTCCGGGATTCTGTGACCATTGCTCTGATCATTGCCGGCGCCACCTTCTTTGGTT
ACGTGGCAACCCGTGTACGGATTCCCCAGCTGATTCTGAAAGAAATGACAGGGTTGGTTTCCTCTCAATTTATGCTGCTT
TTACTGATCAATATTTTCCTGTTGGTTATTGGCTGTTTCCTGGAAACCGCTTCCGCCATCACCATTGTTGTACCGCTGAT
TATGCCTCTCCTGAAAGCGTACCATGTAAACTTTACGCAGTTTGGCATCATCATGGTATTGAATCTGATGATTGGGCTGT
TGACGCCGCCTTTTGGCCTGGTCTTGTTCGTAGTCAGCAAGATTGGTCATATATCTGTAGGTCATTTCTCAAGAGCACTG
CTTCCCTGGCTGGCCTGTCTGCTGATTGCCTTGATGCTGATTACATTTGTCCCATCCATCAGCCTGTGGTTTCCCACATT
TCTGGGAATGACTGTATAG

Protein sequence : 
MTTNTIILMLLVSMLALFLLKVPVYISMSLAGCAVLATRFGMKWSLLSQYLYTGVDSFTLLSIPLFLLAAKIMNTGSITK
KLFSFCMKVVGWLPGGLGHVNVLCSVIFAGMSGTAVSDAGGLGSIEIKAMNENGFDNDFSCCVTAASSTLGPIIPPSIPL
VVYATVSGASVGALFMAGIIPGLVMAILMMVLVSAYAILRHYPRTKFPSGGEFFTALKDGFLPLMAPVILLVGIYGGVFT
PTESAAIVVCYSLFLEICIYRELTLEKFISILKETFRDSVTIALIIAGATFFGYVATRVRIPQLILKEMTGLVSSQFMLL
LLINIFLLVIGCFLETASAITIVVPLIMPLLKAYHVNFTQFGIIMVLNLMIGLLTPPFGLVLFVVSKIGHISVGHFSRAL
LPWLACLLIALMLITFVPSISLWFPTFLGMTV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC0395_A1375 YP_001217318.1 hypothetical protein Not tested VPI-2 Protein 3e-62 43
VPI2_0025c ACA01842.1 TRAP dicarboxylate transporter DctM subunit Not tested VPI-2 Protein 2e-62 43
VC1777 NP_231412.1 hypothetical protein Not tested VPI-2 Protein 3e-62 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Acfer_2015 YP_003399677.1 TRAP dicarboxylate transporter subunit DctM VFG1110 Protein 1e-62 43