Gene Information

Name : Acfer_0126 (Acfer_0126)
Accession : YP_003397850.1
Strain : Acidaminococcus fermentans DSM 20731
Genome accession: NC_013740
Putative virulence/resistance : Virulence
Product : two component transcriptional regulator, winged helix family
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 146703 - 147380 bp
Length : 678 bp
Strand : -
Note : PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: cth:Cthe_1600 two component transcriptional regulator

DNA sequence : 
ATGGCGCTGATCTATTGTGTGGAAGACGATGAAAACATCCGGGAACTGGTCCGTTATGCCCTTTGCAGCCAGAAATTCCA
GGCGGAAGCCTTTCCTGACGGTCCCTCTTTCTGGAAGGCCCTGGAAGCCAAACAGCCGGATCTGGTGCTCCTGGACATTA
TGCTGCCGGGAGAAAGCGGCCTGGACATCCTGAAGAAGCTCCGGGACAGCCAGGCCACCAGCGGTCTGCCCGTAATCATG
CTCACCGCCCGGACCAGTGAATACGACGTGGTCACCGGACTGGATGCCGGGGCGGACGATTATATCTCCAAACCCTTCGG
CATCATGGAACTGCTGAGCCGGGTCAAGGCCGTCCTCCGCCGGGGCGGCCGGCAGAAGCCCCAGGACCGGAACCTGCTGG
TCTGCGGAGACATTACCCTGGACCTGAAGAAACACCGGGTGACTACTCAGGGCCAGCCCTGTGAACTCACCGTCAAGGAA
TTCGATCTGCTCCACTATCTCATGGCCAATGCAGGCATTGTCCTGAGCCGGGACCAGATCATGGAAGCCGTATGGTCCTT
TTCCTATGCGGGAGAAAGCCGCACCATCGACATGCACATCCGGAGCCTGCGCCAGAAGCTGGGAGAAGCCGGACGGATCA
TCCAGACCGTCCGGGGCGTGGGCTACCGGATCCAGTGA

Protein sequence : 
MALIYCVEDDENIRELVRYALCSQKFQAEAFPDGPSFWKALEAKQPDLVLLDIMLPGESGLDILKKLRDSQATSGLPVIM
LTARTSEYDVVTGLDAGADDYISKPFGIMELLSRVKAVLRRGGRQKPQDRNLLVCGDITLDLKKHRVTTQGQPCELTVKE
FDLLHYLMANAGIVLSRDQIMEAVWSFSYAGESRTIDMHIRSLRQKLGEAGRIIQTVRGVGYRIQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 3e-29 44
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 3e-28 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Acfer_0126 YP_003397850.1 two component transcriptional regulator, winged helix family BAC0083 Protein 3e-31 42
Acfer_0126 YP_003397850.1 two component transcriptional regulator, winged helix family NC_002695.1.915041.p Protein 4e-24 42
Acfer_0126 YP_003397850.1 two component transcriptional regulator, winged helix family BAC0533 Protein 4e-24 42
Acfer_0126 YP_003397850.1 two component transcriptional regulator, winged helix family CP000034.1.gene3834. Protein 4e-24 42
Acfer_0126 YP_003397850.1 two component transcriptional regulator, winged helix family CP000647.1.gene4257. Protein 4e-24 42
Acfer_0126 YP_003397850.1 two component transcriptional regulator, winged helix family CP001138.1.gene4273. Protein 3e-24 42
Acfer_0126 YP_003397850.1 two component transcriptional regulator, winged helix family AE000516.2.gene3505. Protein 2e-32 41
Acfer_0126 YP_003397850.1 two component transcriptional regulator, winged helix family CP001918.1.gene5135. Protein 4e-24 41
Acfer_0126 YP_003397850.1 two component transcriptional regulator, winged helix family BAC0111 Protein 5e-31 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Acfer_0126 YP_003397850.1 two component transcriptional regulator, winged helix family VFG0596 Protein 1e-29 44