Gene Information

Name : Slin_0828 (Slin_0828)
Accession : YP_003385689.1
Strain : Spirosoma linguale DSM 74
Genome accession: NC_013730
Putative virulence/resistance : Resistance
Product : small multidrug resistance protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG2076
EC number : -
Position : 1006058 - 1006387 bp
Length : 330 bp
Strand : +
Note : PFAM: small multidrug resistance protein; KEGG: cti:RALTA_A2166 small multidrug resistance protein (SMR family)

DNA sequence :
ATGAAATACCTGCTTTTGTTAATCGCGATCATTTTTGAAGTCATCGGGACGGCGTCTTTGAATGCATCCCAACAGTTCAC
CAAACTAACGCCTAGCTTGCTGTGCCTTGTGGCCTATATTGGTGCTTTCTATTTTATGAGTTTAACGTTACGCAGTATGC
CCGTTGGCACAGCCTATGCGCTTTGGTCGGGTGTTGGTATCGTGCTGACTGCTATCATTGGCCTATTTCTCTTCAAGCAA
GTGCCGGATACGGCCGCCCTGGTGGGGATGACCCTGATTGTAGCAGGCGTATTAGTGATGAACCTGCTATCAAAAACCAC
AGGGCATTGA

Protein sequence :
MKYLLLLIAIIFEVIGTASLNASQQFTKLTPSLLCLVAYIGAFYFMSLTLRSMPVGTAYALWSGVGIVLTAIIGLFLFKQ
VPDTAALVGMTLIVAGVLVMNLLSKTTGH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
qacEdelta1 AGK07074.1 QacEdelta1 Not tested SGI1 Protein 2e-17 50
qacE-delta1 AFG30112.1 QacE-delta1 Not tested PAGI-2 Protein 2e-17 50
qacEdelta1 CAJ77030.1 Quaternary ammonium compound-resistance protein Not tested AbaR1 Protein 2e-17 50
qacEdelta1 YP_005797134.1 quaternary ammonium compound-resistance protein Not tested AbaR4e Protein 3e-17 50
qacEdelta1 AGK07100.1 QacEdelta1 Not tested SGI1 Protein 2e-17 50
qacEdelta1 AGF34989.1 QacEdelta1 Not tested SGI1 Protein 2e-17 50
qacEdelta1 CAJ77049.1 Quaternary ammonium compound-resistance protein Not tested AbaR1 Protein 2e-17 50
qacEdelta1 YP_005797150.1 quaternary ammonium compound-resistance protein Not tested AbaR4e Protein 3e-17 50
qacEdelta1 AGK07109.1 QacEdelta1 Not tested SGI1 Protein 2e-17 50
qacEdelta1 AGF35028.1 QacEdelta1 Not tested SGI1 Protein 2e-17 50
qacEdelta1 CAJ77052.1 Quaternary ammonium compound-resistance protein Not tested AbaR1 Protein 2e-17 50
ebr YP_006098377.1 putative ethidium bromide resistance protein Not tested Tn2411 Protein 3e-17 50
qacEdelta1 AFV53123.1 QacEdelta1 multidrug exporter Not tested AbGRI2-1 Protein 2e-17 50
qacEdelta1 AGF35063.1 QacEdelta1 Not tested SGI1 Protein 2e-17 50
qacEdelta1 CAJ77088.1 Quaternary ammonium compound-resistance protein Not tested AbaR1 Protein 2e-17 50
qacEdelta1 ACN81026.1 QacEdelta1 Not tested AbaR5 Protein 3e-17 50
qacEdelta1 AGK36647.1 QacEdelta1 Not tested AbaR26 Protein 2e-17 50
qacEdelta1 AGK06933.1 QacEdelta1 Not tested SGI1 Protein 2e-17 50
qacE-deltal ACF06159.1 quartenary ammonium compound resistance protein Not tested Tn5036-like Protein 2e-17 50
qacEdelta1 AAK02047.1 quaternary ammonium compound and disinfectant protein Not tested SGI1 Protein 2e-17 50
qacEdelta1 AGK06970.1 QacEdelta1 Not tested SGI1 Protein 2e-17 50
qacE-delta1 ACY75523.1 QacE-delta1 Not tested Tn6060 Protein 2e-17 50
qacEdelta1 AAK02056.1 quaternary ammonium compound and disinfectant protein Not tested SGI1 Protein 2e-17 50
qacEdelta1 AGK06979.1 QacEdelta1 Not tested SGI1 Protein 2e-17 50
qacE-delta1 ACY75532.1 QacE-delta1 Not tested Tn6060 Protein 2e-17 50
qacEdelta1 ABB48428.1 QacEdelta1 Not tested SGI1 Protein 2e-17 50
qacEdelta1 AGK07016.1 QacEdelta1 Not tested SGI1 Protein 2e-17 50
qacE-delta1 AET25389.1 QacE-delta1 Not tested PAGI-2(C) Protein 2e-17 50
qacEdelta1 ABZ01839.1 QacEdelta1 Not tested SGI2 Protein 2e-17 50
ACICU_00227 YP_001844886.1 membrane transporter Not tested AbaR20 Protein 3e-17 50

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Slin_0828 YP_003385689.1 small multidrug resistance protein BAC0322 Protein 1e-22 53
Slin_0828 YP_003385689.1 small multidrug resistance protein BAC0324 Protein 4e-20 51
Slin_0828 YP_003385689.1 small multidrug resistance protein CP004022.1.gene1549. Protein 8e-20 51
Slin_0828 YP_003385689.1 small multidrug resistance protein NC_010410.6003348.p0 Protein 7e-20 51
Slin_0828 YP_003385689.1 small multidrug resistance protein BAC0002 Protein 7e-20 51
Slin_0828 YP_003385689.1 small multidrug resistance protein BAC0377 Protein 4e-21 51
Slin_0828 YP_003385689.1 small multidrug resistance protein BAC0323 Protein 9e-18 50
Slin_0828 YP_003385689.1 small multidrug resistance protein NC_002695.1.913273.p Protein 1e-15 48
Slin_0828 YP_003385689.1 small multidrug resistance protein BAC0139 Protein 7e-16 48
Slin_0828 YP_003385689.1 small multidrug resistance protein BAC0329 Protein 3e-15 48
Slin_0828 YP_003385689.1 small multidrug resistance protein BAC0150 Protein 1e-15 47
Slin_0828 YP_003385689.1 small multidrug resistance protein CP001138.1.gene1489. Protein 2e-18 47
Slin_0828 YP_003385689.1 small multidrug resistance protein BAC0192 Protein 3e-18 46
Slin_0828 YP_003385689.1 small multidrug resistance protein BAC0327 Protein 2e-14 45
Slin_0828 YP_003385689.1 small multidrug resistance protein BAC0140 Protein 4e-12 43
Slin_0828 YP_003385689.1 small multidrug resistance protein BAC0326 Protein 4e-14 43
Slin_0828 YP_003385689.1 small multidrug resistance protein BAC0325 Protein 3e-14 42
Slin_0828 YP_003385689.1 small multidrug resistance protein BAC0249 Protein 2e-09 42
Slin_0828 YP_003385689.1 small multidrug resistance protein AE000516.2.gene3301. Protein 2e-09 42