Gene Information

Name : Slin_0732 (Slin_0732)
Accession : YP_003385594.1
Strain : Spirosoma linguale DSM 74
Genome accession: NC_013730
Putative virulence/resistance : Virulence
Product : transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 887302 - 887997 bp
Length : 696 bp
Strand : -
Note : PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: sfu:Sfum_2007 transcriptional regulator

DNA sequence : 
ATGACAAATACAGCAAAGCCCCACTTGTTGGTTGTTGAAGACGAAACCAAAGTGGCCCTCTTCATAAAAAAAGGACTTGA
AACGCAATCCCTCACCGTCACCGTTGCAGCTGATGGTCGGGAAGGCAAACGCCTGATTAGCTCGGAACGCTTTGACCTGG
TTATCCTCGATGTCAATCTACCTTTTGTGAGCGGGCTGGAATTGGCCGAATACATACGCACTAAAAATGCTCAAATGCCC
ATTCTGATGCTCACGGCCCTCGACTCAACCACCGACAAACTCATGGGATTCGAAGCCGGAGCGGACGACTATCTGGCCAA
ACCATTCGACTTTCTGGAGCTGGTGGCTCGCGTTCGGGCATTACTCCGCCGGTCGGCCCCGCCCGAAGAAAGCCAGCCCA
TACTGCGGCTGGCCGATCTGGAACTGGACCGTCAGCAAAAGGTAGCCCGACGCGCCGGGCGAACCATCGACCTGACCGCC
CGGGAGTTTGCCTTACTGGACTATCTGCTGCGCAATCAGGGAAGGGTCGTATCGCGGGTCGATATTGCCGAACAGGTCTG
GGATGTAGGTTTCGATACCGGCACTAATGTTATTGATGTGTATGTAAATTACCTTCGGAACAAAATTGACAAAGGCGAAC
CTGTGAAGCTGATTCATACCGTTGTTGGCTTCGGCTATGTGCTGAAGGAAAAATAA

Protein sequence : 
MTNTAKPHLLVVEDETKVALFIKKGLETQSLTVTVAADGREGKRLISSERFDLVILDVNLPFVSGLELAEYIRTKNAQMP
ILMLTALDSTTDKLMGFEAGADDYLAKPFDFLELVARVRALLRRSAPPEESQPILRLADLELDRQQKVARRAGRTIDLTA
REFALLDYLLRNQGRVVSRVDIAEQVWDVGFDTGTNVIDVYVNYLRNKIDKGEPVKLIHTVVGFGYVLKEK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 5e-29 42
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 3e-28 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Slin_0732 YP_003385594.1 transcriptional regulator BAC0125 Protein 7e-38 48
Slin_0732 YP_003385594.1 transcriptional regulator BAC0111 Protein 1e-36 48
Slin_0732 YP_003385594.1 transcriptional regulator BAC0638 Protein 7e-30 48
Slin_0732 YP_003385594.1 transcriptional regulator BAC0197 Protein 2e-35 47
Slin_0732 YP_003385594.1 transcriptional regulator BAC0083 Protein 1e-34 46
Slin_0732 YP_003385594.1 transcriptional regulator HE999704.1.gene1528. Protein 2e-30 42
Slin_0732 YP_003385594.1 transcriptional regulator Y16952.3.orf35.gene. Protein 6e-23 42
Slin_0732 YP_003385594.1 transcriptional regulator U82965.2.orf14.gene. Protein 1e-22 42
Slin_0732 YP_003385594.1 transcriptional regulator BAC0308 Protein 2e-34 41
Slin_0732 YP_003385594.1 transcriptional regulator BAC0347 Protein 4e-30 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Slin_0732 YP_003385594.1 transcriptional regulator VFG1390 Protein 1e-36 44
Slin_0732 YP_003385594.1 transcriptional regulator VFG0596 Protein 2e-29 42
Slin_0732 YP_003385594.1 transcriptional regulator VFG1389 Protein 2e-29 41