Gene Information

Name : Slin_6499 (Slin_6499)
Accession : YP_003391255.1
Strain : Spirosoma linguale DSM 74
Genome accession: NC_013730
Putative virulence/resistance : Resistance
Product : ABC transporter
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 7884325 - 7885017 bp
Length : 693 bp
Strand : -
Note : PFAM: ABC transporter; SMART: ATPase AAA; KEGG: pmy:Pmen_2559 ABC transporter

DNA sequence : 
ATGAGCATTCTTCGCGTCGAAAATCTGACGAAAACCTATTCGAGTGGGGGTCAGGATTTAACCGTTCTGCACGGTGTCAA
CTTCACCCTCGAACCCGGCGATACCTTCTCCATCGTTGGCCCATCGGGCAGCGGCAAAACAACCCTGCTGGGCTTGTGTG
CGGGTCTGGACCGGTCTTCGTCGGGTAGCGTTTATCTTAATGATGTTCGGCTGGATACGCTCAATGAAGACCAGCGGGCG
GCTATTCGCAATCAGTACGTTGGCTTTATTTTCCAGAATTTTCAGTTACTACCGACCCTCACCGCGCTCGAAAACGTGAT
GGTGCCGCTCGAACTTCGTGGTGAGAAGGGAGCGGCCAGAGCTGCTCAGGCTCTGCTGGAACGCGTTGGTCTGGGCAAAC
GCGGGCACCACTACCCTACTCAATTGTCGGGTGGTGAGCAGCAACGCGTATCGCTGGCCCGTGCCTTTGCCAACCGGCCC
AAACTGCTTTTTGCCGATGAGCCAACCGGCAACCTCGACGCCGACACCAGCGCCACTGTTGTCGACCTACTTTTTGAACT
CAACCGCGAAGCCGGAACAACCCTCGTTCTGGTCACGCACGACATGGAACTGGCTGCCCGCACCCAGCGGGTTATCCGAA
TTAAAGGTGGAACGGTCGTCGATCAATTTGTGAATGATAGAATGATTCAATGA

Protein sequence : 
MSILRVENLTKTYSSGGQDLTVLHGVNFTLEPGDTFSIVGPSGSGKTTLLGLCAGLDRSSSGSVYLNDVRLDTLNEDQRA
AIRNQYVGFIFQNFQLLPTLTALENVMVPLELRGEKGAARAAQALLERVGLGKRGHHYPTQLSGGEQQRVSLARAFANRP
KLLFADEPTGNLDADTSATVVDLLFELNREAGTTLVLVTHDMELAARTQRVIRIKGGTVVDQFVNDRMIQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-36 43
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 5e-37 43
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 5e-37 43
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 5e-37 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Slin_6499 YP_003391255.1 ABC transporter NC_012469.1.7686878. Protein 9e-41 43
Slin_6499 YP_003391255.1 ABC transporter CP001581.1.gene598.p Protein 2e-37 42
Slin_6499 YP_003391255.1 ABC transporter NC_008702.1.4606598. Protein 1e-32 42
Slin_6499 YP_003391255.1 ABC transporter NC_012469.1.7685735. Protein 1e-35 41