Gene Information

Name : Slin_5121 (Slin_5121)
Accession : YP_003389892.1
Strain : Spirosoma linguale DSM 74
Genome accession: NC_013730
Putative virulence/resistance : Resistance
Product : ABC transporter
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 6260496 - 6261218 bp
Length : 723 bp
Strand : -
Note : PFAM: ABC transporter; SMART: ATPase AAA; KEGG: mxa:MXAN_4199 macrolide efflux ABC transporter ATP-binding protein

DNA sequence : 
ATGAATATTATTGAAACCCAAAGTATCGCCAAACGCTATGTGATGGGTACCGAGGTAGTAGAGGCCCTCAAGTCAATCAC
CATCAGCATTAATAAAGGAGAGTACGTGGCATTTATGGGGCCATCCGGTTCCGGCAAGTCCACCCTCATGAACATTGTCG
GCTGCCTCGACTCGCCCACATCCGGGAAGTACATCCTGAATAACCAGGACGTAAGCAGTATGGGCGAAAACGAACTGGCG
GAAGTACGGAACAAAGAAATTGGCTTCGTATTCCAAACGTTCAACCTGTTGCCCCGGCAAACATCGCTCGAAAACGTGGC
ACTGCCGCTCATTTACGCAGGCTACAGCAAAGCCGACCGTACCGAAAAAGCGATGATGGCCCTGAAAAATGTCGGTCTGG
AAAATCGGGCCGGGCACCGGCCTAACGAATTATCGGGTGGACAGCGGCAACGGGTAGCCGTAGCGCGGGCACTGGTCAAT
GACCCGAGTATTCTGCTTGCTGACGAACCAACCGGTAACCTCGATACCAAAACTTCCTACGAAATCATGGACCTTTTCGA
CCAGATTCATAGCAAGGGCAACACCGTGATCATGGTTACGCACGAAGAAGATATTGCTGAGTACGCGCACCGAATTATCC
GACTCCGCGACGGGCTAATCGAAACGGATCGCGCTAATACGAACATCCGCAAGGCGAAGGCCCTGATGCAGTCGCTGGAG
TAA

Protein sequence : 
MNIIETQSIAKRYVMGTEVVEALKSITISINKGEYVAFMGPSGSGKSTLMNIVGCLDSPTSGKYILNNQDVSSMGENELA
EVRNKEIGFVFQTFNLLPRQTSLENVALPLIYAGYSKADRTEKAMMALKNVGLENRAGHRPNELSGGQRQRVAVARALVN
DPSILLADEPTGNLDTKTSYEIMDLFDQIHSKGNTVIMVTHEEDIAEYAHRIIRLRDGLIETDRANTNIRKAKALMQSLE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 7e-34 43
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-35 41
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 4e-35 41
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-35 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Slin_5121 YP_003389892.1 ABC transporter NC_012469.1.7686878. Protein 3e-58 56
Slin_5121 YP_003389892.1 ABC transporter NC_008702.1.4606598. Protein 4e-51 50
Slin_5121 YP_003389892.1 ABC transporter CP001581.1.gene798.p Protein 2e-41 46
Slin_5121 YP_003389892.1 ABC transporter CP001581.1.gene598.p Protein 7e-45 45