Gene Information

Name : Slin_4589 (Slin_4589)
Accession : YP_003389367.1
Strain : Spirosoma linguale DSM 74
Genome accession: NC_013730
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 5562445 - 5563122 bp
Length : 678 bp
Strand : +
Note : PFAM: ABC transporter; SMART: ATPase AAA; KEGG: cps:CPS_4701 ABC transporter ATP-binding protein

DNA sequence : 
ATGATCCAGACAATTAACCTTCAAAAACTCTTTTCGACCGAAGAAGTCGAAACCACCGCCCTCAACGGCATCAACATGGA
TGTGAAAGACGGCGAGTTCGTTGCCATCATGGGGCCATCGGGCTGCGGCAAATCCACGCTGCTTAACATCCTGGGTCTAC
TGGATAACCCCAGCGAAGGCGAGTACAATTTCTACGGCACGGAGGTCGCCAAAATGACCGAACGTCAGCGGGCGCAACTC
CGCAAAGGCTCCATCGGCTTCGTGTTCCAGAGCTTTAACCTGATCGACGAACTGACCGTATATGAGAACGTCGAGCTGCC
CTTGCTGTACCTGAAAACGCCCCCCGACGAGCGGAAGAAGCGCGTAGAAGAGGCCTTGGAACGGATGAGCATCATGCACC
GGCGCAATCACTTCCCGCAGCAGCTTTCGGGTGGTCAGCAGCAGCGGACGGCCATCGCACGGGCGGTTGTTGCCAAACCC
AAGCTGATCCTGGCCGATGAACCGACGGGTAACCTCGACTCGAAGAATGGCGAAGAAGTAATGAAACTATTGGGCGAACT
GAACGACGAAGGCACCACGATTATCATGGTAACCCACTCACCCTACGACGCCGGTTTCGCGCATCGCATTGTGAACTTGT
TTGATGGTAAGGTGGTCACGGAAAATTTCCACGTGTAG

Protein sequence : 
MIQTINLQKLFSTEEVETTALNGINMDVKDGEFVAIMGPSGCGKSTLLNILGLLDNPSEGEYNFYGTEVAKMTERQRAQL
RKGSIGFVFQSFNLIDELTVYENVELPLLYLKTPPDERKKRVEEALERMSIMHRRNHFPQQLSGGQQQRTAIARAVVAKP
KLILADEPTGNLDSKNGEEVMKLLGELNDEGTTIIMVTHSPYDAGFAHRIVNLFDGKVVTENFHV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 4e-33 41
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-33 41
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-33 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Slin_4589 YP_003389367.1 ABC transporter NC_012469.1.7686878. Protein 1e-51 50
Slin_4589 YP_003389367.1 ABC transporter NC_008702.1.4606598. Protein 4e-42 47
Slin_4589 YP_003389367.1 ABC transporter CP001581.1.gene798.p Protein 2e-36 46
Slin_4589 YP_003389367.1 ABC transporter NC_012469.1.7686946. Protein 8e-33 44
Slin_4589 YP_003389367.1 ABC transporter CP001581.1.gene598.p Protein 2e-35 43
Slin_4589 YP_003389367.1 ABC transporter NC_012469.1.7685735. Protein 2e-34 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Slin_4589 YP_003389367.1 ABC transporter VFG0869 Protein 1e-25 41