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Name : Slin_4077 (Slin_4077) Accession : YP_003388863.1 Strain : Spirosoma linguale DSM 74 Genome accession: NC_013730 Putative virulence/resistance : Virulence Product : nucleotide sugar dehydrogenase Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG0677 EC number : - Position : 4905777 - 4907111 bp Length : 1335 bp Strand : - Note : TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP- glucose/GDP-mannose dehydrogenase dimerisation; UDP- glucose/GDP-mannose dehydrogenase; KEGG: sat:SYN_01113 UDP-N-acetyl-D-galactosamine 6- dehydrogenase DNA sequence : ATGTTTAAAATTAGGCTCAACGAATTTAACCACCAACAAGGCTTGCTAAACGACCTTCAACAGAAAGAAAAACAACTGGC CGTTATCGGGTTGGGCTACGTGGGCCTACCGATAGCGCTGGCCTTTGCCCAACGGTTTCGGGTGGTGGGCTTCGATACCA ACGCCGAACGGGTGGCTATGCTGCAACGGCACGAAGATCCATCGCGTCAGCTAAAGCCCGGCGATTTTACCGGGGCCGAT ATCCGGTTTACCGCTAATCCCGATGACCTCCGAAACGCCCATTTTTTTGTTGTGGCGGTGCCTACACCGGTCGATGAGTA CAAAGTCCCCGATCTGAAACCCCTGCAACGGGCGTCCGAAATCATTGGTCGTGTCCTGAAACCCGGCGACTACGTCGTCT ATGAGTCTACCGTTTACCCCGGCTGTACCGAAGACGATTGCCTGCCGCTGCTGGAACAGTATTCCGGCCTGAAGCTGGGT GATGACTTTAAGCTGGGCTACTCGCCGGAACGGATCAACCCCGGCGATAAGGTTCGAACGCTGACCGATATACTAAAAGT AGTGTCGGGTAACGATGCCGAAGCAGTGCAGACAATTGCTGATGTATACGGCAGTATCATCCGGGCCGGTATATACGCTG CGACCTCCATTAAGGTTGCCGAAGCAGCCAAGGTCATCGAAAATGTTCAGCGGGATCTCAACATATCGCTGATGAATGAA TTGGCGGTCATTTTTGACAAAATGAGTATCGACACGCAGGAGGTACTGAAAGCTGCGTCGACGAAATGGAATTTTTTGCC GTTTACGCCGGGGCTGGTCGGCGGGCATTGTATTGGCATTGACCCCTATTACCTTCTTTACAAATCGCGGCAGCTGGGTT ATGAACCGCAGGTAATCAACTCGGGTCGGCGCGTCAACGACAGTATGCCCGCTTTTGTGGCCACCAAGCTGGTTCAGCTG TTGCTCCAGCGCGAGAAGAATCCGGCGCAGACTAAAGTACTGGTCATGGGCCTCACATTCAAGGAAAACATTGCCGACAT CCGCAACTCGAAAGTAGTCGACCTGGTGCGGGAGCTGATGAAATACGCCATCAACGTTCATATCGTTGATCCGTGCGCGT CGCCGAACGAAGTAGCGCTCGACTACAAAATGACCCTGCTGGATGCACCGGTCGGCCGGTACGACGCCGTCATTGTTGCC GTTGCCCACGACCAGTATCGCACACTGGATGTGGTCTATTTTAAGTCGCTGATGACGGAGCGGCCGATTTTACTGGATTT GAAGGGATTGTATACCATAGGCCGGGAAGATGATCTAACCTACTGGCGATTATAA Protein sequence : MFKIRLNEFNHQQGLLNDLQQKEKQLAVIGLGYVGLPIALAFAQRFRVVGFDTNAERVAMLQRHEDPSRQLKPGDFTGAD IRFTANPDDLRNAHFFVVAVPTPVDEYKVPDLKPLQRASEIIGRVLKPGDYVVYESTVYPGCTEDDCLPLLEQYSGLKLG DDFKLGYSPERINPGDKVRTLTDILKVVSGNDAEAVQTIADVYGSIIRAGIYAATSIKVAEAAKVIENVQRDLNISLMNE LAVIFDKMSIDTQEVLKAASTKWNFLPFTPGLVGGHCIGIDPYYLLYKSRQLGYEPQVINSGRRVNDSMPAFVATKLVQL LLQREKNPAQTKVLVMGLTFKENIADIRNSKVVDLVRELMKYAINVHIVDPCASPNEVALDYKMTLLDAPVGRYDAVIVA VAHDQYRTLDVVYFKSLMTERPILLDLKGLYTIGREDDLTYWRL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cap1L | AAA64651.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 2e-101 | 50 |
| tviB | NP_458740.1 | Vi polysaccharide biosynthesis protein, UDP-glucose/GDP-mannose dehydrogenase | Virulence | SPI-7 | Protein | 1e-100 | 50 |
| tviB | NP_807945.1 | VI polysaccharide biosynthesis UDP-glucose/GDP-mannose dehydrogenase | Virulence | SPI-7 | Protein | 1e-100 | 50 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Slin_4077 | YP_003388863.1 | nucleotide sugar dehydrogenase | VFG0431 | Protein | 4e-101 | 50 |
