Gene Information

Name : Slin_0401 (Slin_0401)
Accession : YP_003385264.1
Strain : Spirosoma linguale DSM 74
Genome accession: NC_013730
Putative virulence/resistance : Unknown
Product : short-chain dehydrogenase/reductase SDR
Function : -
COG functional category : I : Lipid transport and metabolism
COG ID : COG1028
EC number : -
Position : 506051 - 506788 bp
Length : 738 bp
Strand : +
Note : PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: rfr:Rfer_4047 3-oxoacyl-(acyl-carrier- protein) reductase

DNA sequence : 
ATGAGATTACAAAACAAAGTTGCCATTATTACCGGAGCCGCCCGGGGTATAGGACAGGCTGCCGCCGAAGTATTTTGTCG
GGAAGGCGCCACGGTTATCATCTGGGATTTGCTGAATGAAGGAGAGGCTACGGCTCAGTCACTGCGCAACCAGGGATTTG
CGTGCACGTTCCAGCATGTCAGCACAACCGATGTGCCCGGTATTGAAGCAGCCGCCCGTTCTGTACACGAGCAGTATGGT
CGGATTGATATTCTGATTAACAACGCCGGGATTACTCGGGATAAAACCCTGCTGAAAATGTCGTTTGCCGACTGGCAGCA
GGTGATCGACGTAAACCTGACGGGTGTTTTTAACTGCACAAAAGTTGTAGCACCCTACATGGTGGAGCAGAAATACGGAC
GTATCATCTGTACCTCCTCGATCAACGGGGTGCATGGTGCCTTTGGCCAAACAAATTATGCCGCTGCTAAAGCGGGAATT
ATCGGCATGGTACGGTCCTGGGCCAAAGAGCTAGGCCCGAAAGGAATTACGGCCAATGCGGTGGCACCGGGTTTTATCCA
AACGGCCATGACCGACGCCATGCCCGACGAGGTGCGCAACCAGGCCGTGGCAACCATTCCGGTTCGGCGCATTGGCAAAC
CGGAAGACATCGCCAACGCATATCTGTTTCTGGCGTCCGACGAAGCTTCATTTGTGAACGGACACGTATTGTCGGTCAAT
GGCGGGCAGGCGTTGTAG

Protein sequence : 
MRLQNKVAIITGAARGIGQAAAEVFCREGATVIIWDLLNEGEATAQSLRNQGFACTFQHVSTTDVPGIEAAARSVHEQYG
RIDILINNAGITRDKTLLKMSFADWQQVIDVNLTGVFNCTKVVAPYMVEQKYGRIICTSSINGVHGAFGQTNYAAAKAGI
IGMVRSWAKELGPKGITANAVAPGFIQTAMTDAMPDEVRNQAVATIPVRRIGKPEDIANAYLFLASDEASFVNGHVLSVN
GGQAL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAT96054.1 putative short-chain type regulator Not tested T-PAI Protein 1e-35 43
unnamed AAT96175.1 putative short-chain type regulator Not tested T-PAI Protein 4e-36 43
unnamed AAT96098.1 putative short-chain type regulator dehydrogenase Not tested T-PAI Protein 4e-36 43
unnamed AAT96227.1 putative short-chain type regulator Not tested T-PAI Protein 2e-36 43
unnamed AAT96115.1 putative short-chain type regulator Not tested T-PAI Protein 8e-37 43