Gene Information

Name : Slin_3939 (Slin_3939)
Accession : YP_003388728.1
Strain : Spirosoma linguale DSM 74
Genome accession: NC_013730
Putative virulence/resistance : Resistance
Product : protein-tyrosine phosphatase, low molecular weight
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0394
EC number : -
Position : 4721856 - 4722281 bp
Length : 426 bp
Strand : +
Note : PFAM: protein-tyrosine phosphatase, low molecular weight; SMART: protein-tyrosine phosphatase, low molecular weight; KEGG: pca:Pcar_1772 protein-tyrosine-phosphatase

DNA sequence : 
ATGAAATCTATTTTAGTACTCTGCACGGGCAATTCAGCCCGCTCCCAAATGGCCCACGGCTACCTTCAACATTTTGCCGG
TGACCGCGCTACGGTGTACAGCGCCGGGGTAGCCCCGCACGGGGTCAATCCGCTGGCTACGCAGGTAATGGCCGAAGACG
GTGTCGATATTTCGCACCATACCTCCAACCACGTCGATGAATACGTGAATCTCCCCATCGACTATGTCATTACCGTGTGC
GACAACGCCCGCGAGCAGTGCCCCTACTTTCCGTCGACGGCGGAGATGATCCACCATAGTTTTACGGACCCGTCTCACGC
TCCGGAAAGCGAACGGCTGGCGCAATTCCGGGTGGTTCGGGACCAGATCAGGCAGTATAGTGAGCAATTTATTAACGAAC
GGCTTTCAGAGTCGGTGGGTGCATGA

Protein sequence : 
MKSILVLCTGNSARSQMAHGYLQHFAGDRATVYSAGVAPHGVNPLATQVMAEDGVDISHHTSNHVDEYVNLPIDYVITVC
DNAREQCPYFPSTAEMIHHSFTDPSHAPESERLAQFRVVRDQIRQYSEQFINERLSESVGA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
arsC YP_252023.1 arsenate reductase Not tested SCCmec Protein 1e-20 44
BCAM0234 YP_002232865.1 putative arsenate reductase Not tested BcenGI11 Protein 2e-15 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Slin_3939 YP_003388728.1 protein-tyrosine phosphatase, low molecular weight BAC0581 Protein 5e-20 43
Slin_3939 YP_003388728.1 protein-tyrosine phosphatase, low molecular weight BAC0032 Protein 6e-20 41