Gene Information

Name : Slin_3615 (Slin_3615)
Accession : YP_003388421.1
Strain : Spirosoma linguale DSM 74
Genome accession: NC_013730
Putative virulence/resistance : Virulence
Product : Fis family transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 4370228 - 4371379 bp
Length : 1152 bp
Strand : +
Note : PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; ATPase AAA; SMART: response regulator receiver; ATPase AAA; KEGG: gme:Gmet_0776 Fis family transcriptional regulator

DNA sequence : 
ATGGCCAAACTGATTATCGTGGACGACGAAAAACCCATTCGGGCGGCCCTACGCGATATTTTAGAGTACGAAGGCTACGA
TGTTGACGAAGCAAAAGACGGCGAAGAAGGGCTGGATATGATTATGCGCACAAGTTACGACGTAGCCTTGTGCGACATTC
GCATGCCGAAACTGAATGGGCTTGAATTGCTTATGAAAGTCAGCGAAGCTGAAAAGAGTACGCAGATCATCATGATTTCG
GCGTACGGCAATGTTGAGAATGCCGTCGAAGCCACCAAGCGGGGAGCGTTCGACTTCATTACAAAACCACCCGATTTAAA
TCGTCTGCTCATTACCGTCCGCAACGCCATTGAGCGATCAAAACTGGTTCAGGAAACCAAAACGCTCAAAAAACGCATCT
ACAAACTAAACGAGATTGTTGGTGAATCCGACTCAATCCGTAAAGTGAAAGATACGATCAATCGGGTAGCCGCTACGGAA
GCCAGGGTGCTGGTAACCGGCGCCAATGGATCGGGCAAAGAGATGGTTGCCAAACAGATTCACGAAAAAGGAAGTCGTGC
CAACCAGCCGCTTATCGAAGTAAACTGCGCAGCCATTCCCAGCGAACTGATTGAAAGTGAACTTTTTGGCCACGAGAAAG
GCGCTTTTACGGGCGCGGCAGCCAAGCGTGTAGGCAAGTTTGAGCAAGCCGACGGCGGTACCCTTTTCCTCGACGAAATT
GGCGACATGAGCCTGTCGGCCCAGGCCAAAGTGCTGCGGGCACTTCAGGAAAGCAAAATTACGCGCGTCGGGGGCGACAA
AGAAATAAAGGTCAACGTCCGGGTTATTGCGGCTACCAACAAAGACCTGCGGCAGGAAATCGTAAACGGTAACTTCCGCG
AAGACTTATTTCACCGGCTGAGCGTCATCATGATCCACGTTCCGCCCTTATCGGAACGGCGGGGCGATATTCCGCTACTA
GCTGATAAATTCCTGCACGATATCGCTACTGAATACGGCGCACCGGCCAAAGAATTGTCGCCCGATGCTATGGACTATCT
ACAATCCCTTCCCTGGACGGGTAACGTTCGGGAATTGCGTAACGTGATTGAGCGCCTGGTAATTATGTGCGGAGATGAGA
TCATGCTCGACGACGTGAAGGCCTACGCGTAA

Protein sequence : 
MAKLIIVDDEKPIRAALRDILEYEGYDVDEAKDGEEGLDMIMRTSYDVALCDIRMPKLNGLELLMKVSEAEKSTQIIMIS
AYGNVENAVEATKRGAFDFITKPPDLNRLLITVRNAIERSKLVQETKTLKKRIYKLNEIVGESDSIRKVKDTINRVAATE
ARVLVTGANGSGKEMVAKQIHEKGSRANQPLIEVNCAAIPSELIESELFGHEKGAFTGAAAKRVGKFEQADGGTLFLDEI
GDMSLSAQAKVLRALQESKITRVGGDKEIKVNVRVIAATNKDLRQEIVNGNFREDLFHRLSVIMIHVPPLSERRGDIPLL
ADKFLHDIATEYGAPAKELSPDAMDYLQSLPWTGNVRELRNVIERLVIMCGDEIMLDDVKAYA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 7e-66 42
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 7e-66 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Slin_3615 YP_003388421.1 Fis family transcriptional regulator BAC0089 Protein 3e-81 44
Slin_3615 YP_003388421.1 Fis family transcriptional regulator BAC0467 Protein 2e-76 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Slin_3615 YP_003388421.1 Fis family transcriptional regulator VFG1214 Protein 1e-74 45