Gene Information

Name : Slin_3454 (Slin_3454)
Accession : YP_003388261.1
Strain : Spirosoma linguale DSM 74
Genome accession: NC_013730
Putative virulence/resistance : Virulence
Product : transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 4186112 - 4186783 bp
Length : 672 bp
Strand : -
Note : PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: dia:Dtpsy_2201 two component heavy metal response transcriptional regulator, winged helix family

DNA sequence : 
GTGAAAATACTGGTTATCGAAGATGAGCGTAAACTGGCCCGATTTATTAAGCAGGGGTTGGAGCAGCACGGGCATGTAGC
CGATCTGACGTATTCGGGTTCCGAAGGGCTCGATCATATTGCCGGTGGGTTGTATGACCTGGTGCTGCTCGATCTGATGC
TTCCCGGTCAAACGGGGTTTGAGGTACTGCAAAATCTGCGTGCGTTTGGCCTGACGGTGCCCGTTATGATTTTATCCGCA
CTAAGCGACCCCGAGCGGGTGGTGCAGGGGCTGGATCTGGGTGCCGTCGACTACCTGAGGAAACCGTTCGACTTCAATGA
ACTGCTGGCCCGTATCCGGGTTTTGCAGCGACGGGCCACAATGGGCAACGATGTTGTGCTTCGGGTGGCCGATCTGGAAA
TGCGGCTCGTTTCGCACGAGGTACATAAGAACAACGTACACCTTGAGCTGACTAATCGGGAATTTGCTTTGCTCGAACTG
CTGATGCGCCGTGCCGGGCAACTCGTTACAAAAAATGAAATTGCCGAAAAGGTGTGGGCTATGGATTTTGACATGGGCAG
CAATGTTATTGAGGTGCATATCTACCAATTGCGAAAAAAGATCGATGCTACCGGTATTCCCGGGCTGATCGAGACGCTTA
TTGGCCGGGGCTATCGGCTTAAAACGACATGA

Protein sequence : 
MKILVIEDERKLARFIKQGLEQHGHVADLTYSGSEGLDHIAGGLYDLVLLDLMLPGQTGFEVLQNLRAFGLTVPVMILSA
LSDPERVVQGLDLGAVDYLRKPFDFNELLARIRVLQRRATMGNDVVLRVADLEMRLVSHEVHKNNVHLELTNREFALLEL
LMRRAGQLVTKNEIAEKVWAMDFDMGSNVIEVHIYQLRKKIDATGIPGLIETLIGRGYRLKTT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 1e-31 42
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 6e-31 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Slin_3454 YP_003388261.1 transcriptional regulator BAC0638 Protein 9e-30 46
Slin_3454 YP_003388261.1 transcriptional regulator BAC0083 Protein 1e-36 45
Slin_3454 YP_003388261.1 transcriptional regulator BAC0197 Protein 2e-37 45
Slin_3454 YP_003388261.1 transcriptional regulator BAC0308 Protein 3e-36 44
Slin_3454 YP_003388261.1 transcriptional regulator BAC0125 Protein 3e-37 43
Slin_3454 YP_003388261.1 transcriptional regulator BAC0111 Protein 8e-37 43
Slin_3454 YP_003388261.1 transcriptional regulator BAC0347 Protein 4e-31 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Slin_3454 YP_003388261.1 transcriptional regulator VFG0596 Protein 4e-32 42