Gene Information

Name : Slin_0313 (Slin_0313)
Accession : YP_003385176.1
Strain : Spirosoma linguale DSM 74
Genome accession: NC_013730
Putative virulence/resistance : Virulence
Product : XRE family transcriptional regulator
Function : -
COG functional category : K : Transcription
COG ID : COG1476
EC number : -
Position : 402597 - 402797 bp
Length : 201 bp
Strand : +
Note : PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: ccs:CCNA_02315 transcriptional regulator, Cro/CI family

DNA sequence :
ATGAAGAACCGACTGAAAGTAGAACGGGCGGAGCACAACCTGTCGCAGGCCGATCTGGCCGACCGAATTAGTGTAAGTCG
GCAAACGATCAACTCCATTGAAACCGGGCGCTACGTGCCTTCTACCATTCTGGCTCTGAAACTGGCGCAGGTGTTCGGCA
AGGCCGTAGAACATATATTTACGCTCGAAGAGACCGATTAA

Protein sequence :
MKNRLKVERAEHNLSQADLADRISVSRQTINSIETGRYVPSTILALKLAQVFGKAVEHIFTLEETD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
EF0524 NP_814301.1 Cro/CI family transcriptional regulator Not tested Not named Protein 1e-06 46
ef0042 AAM75247.1 EF0042 Virulence Not named Protein 9e-07 46
SH2314 YP_254229.1 hypothetical protein Not tested ¥ðSh1 Protein 4e-09 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Slin_0313 YP_003385176.1 XRE family transcriptional regulator VFG2175 Protein 4e-07 46
Slin_0313 YP_003385176.1 XRE family transcriptional regulator VFG2168 Protein 4e-07 46