Gene Information

Name : Slin_2552 (Slin_2552)
Accession : YP_003387369.1
Strain : Spirosoma linguale DSM 74
Genome accession: NC_013730
Putative virulence/resistance : Virulence
Product : transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 3085358 - 3086050 bp
Length : 693 bp
Strand : -
Note : PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: sfu:Sfum_2007 transcriptional regulator

DNA sequence : 
ATGAAGAAAATACTAATTATTGAAGACGATCGTCGTATTGCCCAGAACATTAGCCGGACGCTACAGGAAGATGGCTATGC
AACGGAGGTGGTTTATGAAGGGATTAACGGCCGTCAGATGGCGTTGCAACCGGGCGTCGATCTGCTGATTCTGGATATCA
ATCTGCCCGGTATCAACGGATTTGAAGTGTGCCGCAGCGTTCGGGCAGAAAAGCCCAATCTCCCCATTATTATGCTGACG
GCATTGGGCGAGATCGAAGATAAAGTAGAAGGATTGGGGCTGGGCGCTGACGACTATCTGGTCAAACCCTTTGATATCCG
GGAATTAATTGCCCGTGTGGAGGCCTGCCTGCGCCGGTCAACCTTGCTGGAGGAAATGACTGCCGAGCCGGAGAAAGTAT
GGCGGGTGGCTAACTTAACCGTCGATTCAGCGTCCCGCGAGGTGAAACGGGGAGAAACTACCATCGACTTGACCGCCCGC
GAGTTCGCTCTGCTGGAATACCTGATTCGTAACCGGGGACGGGTGATGGCAAAACTGGATATTACCGAGCAGGTCTGGAA
TCTAAATTTCGACCCTACTACCAATGTCGTAGAGGTGTATATCAACTACCTCCGTAAAAAGATCGATCGGGATTTTGAAC
CCAAGCTCATACACACGAGGCCGGGTATGGGCTATGTACTTAAAGAGGAGTAG

Protein sequence : 
MKKILIIEDDRRIAQNISRTLQEDGYATEVVYEGINGRQMALQPGVDLLILDINLPGINGFEVCRSVRAEKPNLPIIMLT
ALGEIEDKVEGLGLGADDYLVKPFDIRELIARVEACLRRSTLLEEMTAEPEKVWRVANLTVDSASREVKRGETTIDLTAR
EFALLEYLIRNRGRVMAKLDITEQVWNLNFDPTTNVVEVYINYLRKKIDRDFEPKLIHTRPGMGYVLKEE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 2e-35 42
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 8e-36 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Slin_2552 YP_003387369.1 transcriptional regulator BAC0638 Protein 1e-36 49
Slin_2552 YP_003387369.1 transcriptional regulator BAC0125 Protein 1e-47 47
Slin_2552 YP_003387369.1 transcriptional regulator BAC0111 Protein 4e-49 47
Slin_2552 YP_003387369.1 transcriptional regulator BAC0083 Protein 3e-44 46
Slin_2552 YP_003387369.1 transcriptional regulator HE999704.1.gene1528. Protein 3e-33 44
Slin_2552 YP_003387369.1 transcriptional regulator BAC0308 Protein 2e-40 44
Slin_2552 YP_003387369.1 transcriptional regulator BAC0347 Protein 2e-41 44
Slin_2552 YP_003387369.1 transcriptional regulator BAC0197 Protein 1e-38 44
Slin_2552 YP_003387369.1 transcriptional regulator AE015929.1.gene1106. Protein 1e-32 43
Slin_2552 YP_003387369.1 transcriptional regulator NC_007793.3914065.p0 Protein 9e-38 42
Slin_2552 YP_003387369.1 transcriptional regulator NC_002758.1121390.p0 Protein 9e-38 42
Slin_2552 YP_003387369.1 transcriptional regulator NC_010079.5776364.p0 Protein 9e-38 42
Slin_2552 YP_003387369.1 transcriptional regulator NC_002952.2859858.p0 Protein 9e-38 42
Slin_2552 YP_003387369.1 transcriptional regulator NC_007622.3794948.p0 Protein 9e-38 42
Slin_2552 YP_003387369.1 transcriptional regulator NC_003923.1003417.p0 Protein 9e-38 42
Slin_2552 YP_003387369.1 transcriptional regulator NC_013450.8614146.p0 Protein 9e-38 42
Slin_2552 YP_003387369.1 transcriptional regulator NC_002951.3238224.p0 Protein 9e-38 42
Slin_2552 YP_003387369.1 transcriptional regulator AF155139.2.orf0.gene Protein 7e-29 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Slin_2552 YP_003387369.1 transcriptional regulator VFG1390 Protein 4e-46 45
Slin_2552 YP_003387369.1 transcriptional regulator VFG0596 Protein 9e-36 42