Gene Information

Name : Slin_2490 (Slin_2490)
Accession : YP_003387308.1
Strain : Spirosoma linguale DSM 74
Genome accession: NC_013730
Putative virulence/resistance : Virulence
Product : transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 3013139 - 3013873 bp
Length : 735 bp
Strand : -
Note : PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: cko:CKO_02246 hypothetical protein

DNA sequence : 
ATGAAACGCCTGCTGTTGATTGAAGACGACCCGGATGTAGCCAGGCTCATTCACGATCATCTGCACCAGTTGCCGGGTGA
ACTGACGACGACAGAATTGGGCAATGAAGGACTGGAACTCCTGGCTATGCAACCCTTCGATATATGCATTCTGGACTTGT
TACTGCCGGATGCCAGCGGGTTCGAGATTTGCCGCCGGATTCGGCAACGGCATCCGGCGGTTCCTTTACTCATACTCAGT
GGGCGAGCCGAAGAGCGCGATAAAGTAACCGGTCTGGAAGCGGGTGCCGACGATTACCTGACCAAACCCTTTAGTGTGCC
GGAATTATTGGCCCGGCTACGAGCATTGCTTCGCAGGAGTGAATTGACTGGCGTTAGTAAACCAATCCAGTCGACAATAC
TTGTTTATCAGCATGGGGCGTTGCGGATTGAGGTACAGGCCCGCATCGTCACCGTAAGCGGCCAGCGTATTGAGCTGACA
CCCAAAGAGTTTGATTTGCTTACACTGCTGGCCAGCTATCCGGGAAAAAGTTTTAGTCGGCAGAAAATTCTCAGCCTCGT
TTGGGGCTACCACCACGATGGCTATGAGCATACCGTTACCGCCCATATTAACCGGCTGCGGATAAAGATCGAACCGGACT
TTACCCGACCAATCTACATTTTAACAACCTGGGGTATTGGCTACCGTTTTGCCGACTCCGATAACCCGACTACGGATGCG
CTCTCCATTCCTTAA

Protein sequence : 
MKRLLLIEDDPDVARLIHDHLHQLPGELTTTELGNEGLELLAMQPFDICILDLLLPDASGFEICRRIRQRHPAVPLLILS
GRAEERDKVTGLEAGADDYLTKPFSVPELLARLRALLRRSELTGVSKPIQSTILVYQHGALRIEVQARIVTVSGQRIELT
PKEFDLLTLLASYPGKSFSRQKILSLVWGYHHDGYEHTVTAHINRLRIKIEPDFTRPIYILTTWGIGYRFADSDNPTTDA
LSIP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 1e-39 47
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 5e-39 46

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Slin_2490 YP_003387308.1 transcriptional regulator HE999704.1.gene2815. Protein 2e-31 43
Slin_2490 YP_003387308.1 transcriptional regulator AF155139.2.orf0.gene Protein 7e-32 42
Slin_2490 YP_003387308.1 transcriptional regulator NC_012469.1.7685629. Protein 1e-27 42
Slin_2490 YP_003387308.1 transcriptional regulator AE000516.2.gene3505. Protein 9e-28 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Slin_2490 YP_003387308.1 transcriptional regulator VFG1563 Protein 9e-40 47
Slin_2490 YP_003387308.1 transcriptional regulator VFG1702 Protein 2e-39 46