Gene Information

Name : Slin_1849 (Slin_1849)
Accession : YP_003386693.1
Strain : Spirosoma linguale DSM 74
Genome accession: NC_013730
Putative virulence/resistance : Virulence
Product : transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 2232815 - 2233501 bp
Length : 687 bp
Strand : +
Note : PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: sfu:Sfum_2007 transcriptional regulator

DNA sequence : 
ATGCGCAGGATTTTGATAATTGAAGATGATCGGCGTATTGCTCAGAACATTAGCCGTAGCCTGCGTGTACTGGGCTATAG
CACTGAGGTTGCCTACGATGGGTTTACAGGCCGGGCGCTGGGGTTAACCGGACAGTATGAACTGATTATTCTGGATATCA
ATCTGCCCGATATAAGCGGTTACGAAATATGCCGTAATATACGGGCCGATCATCCTACGCTGCCCATCATCATGCTGACG
GCAATGGGCGAAATTGAAGACAAAATAGAGGGGCTGGAGTGTGGGGCCGACGACTACATTGTGAAGCCGTTCGATCTGCG
CGAACTTAGTGCGCGTGTAGCCACCTGCTTTCGCCGATCCGATTTGCTGATTAGTTCTACCGGAGAAGAAATGCTTCAGG
TAGCCGATCTAACGCTGAATGTAACGTCGAAGGTCGTAATGCGGGATAATACGTTTATCGAGCTGACGGCCAAAGAGTTT
GCTCTTTTGGAATACCTCATGCGGCATCAGGGACGGGTGGTTTCCAAGATTGACCTGGCCGAAAAGGTTTGGAATTTTAA
CTTCGATCCGGGTACCAACGTGGTGGAGGTATACATCAACTACCTCCGCAAAAAGATTGATAAAGAGTTTGATGTAAAAC
TCATTCATACACGTCCCGGACTGGGATACACCCTAAAAGCCGACTAG

Protein sequence : 
MRRILIIEDDRRIAQNISRSLRVLGYSTEVAYDGFTGRALGLTGQYELIILDINLPDISGYEICRNIRADHPTLPIIMLT
AMGEIEDKIEGLECGADDYIVKPFDLRELSARVATCFRRSDLLISSTGEEMLQVADLTLNVTSKVVMRDNTFIELTAKEF
ALLEYLMRHQGRVVSKIDLAEKVWNFNFDPGTNVVEVYINYLRKKIDKEFDVKLIHTRPGLGYTLKAD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 1e-33 42
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 5e-33 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Slin_1849 YP_003386693.1 transcriptional regulator BAC0111 Protein 1e-44 47
Slin_1849 YP_003386693.1 transcriptional regulator BAC0083 Protein 2e-41 46
Slin_1849 YP_003386693.1 transcriptional regulator BAC0638 Protein 3e-31 45
Slin_1849 YP_003386693.1 transcriptional regulator BAC0347 Protein 9e-39 43
Slin_1849 YP_003386693.1 transcriptional regulator BAC0125 Protein 1e-39 43
Slin_1849 YP_003386693.1 transcriptional regulator BAC0197 Protein 3e-37 43
Slin_1849 YP_003386693.1 transcriptional regulator BAC0308 Protein 3e-34 43
Slin_1849 YP_003386693.1 transcriptional regulator AM180355.1.gene1830. Protein 5e-20 42
Slin_1849 YP_003386693.1 transcriptional regulator EU250284.1.orf4.gene Protein 6e-18 42
Slin_1849 YP_003386693.1 transcriptional regulator NC_007793.3914065.p0 Protein 4e-33 41
Slin_1849 YP_003386693.1 transcriptional regulator NC_002758.1121390.p0 Protein 4e-33 41
Slin_1849 YP_003386693.1 transcriptional regulator NC_010079.5776364.p0 Protein 4e-33 41
Slin_1849 YP_003386693.1 transcriptional regulator NC_002952.2859858.p0 Protein 4e-33 41
Slin_1849 YP_003386693.1 transcriptional regulator NC_007622.3794948.p0 Protein 4e-33 41
Slin_1849 YP_003386693.1 transcriptional regulator NC_003923.1003417.p0 Protein 4e-33 41
Slin_1849 YP_003386693.1 transcriptional regulator NC_013450.8614146.p0 Protein 4e-33 41
Slin_1849 YP_003386693.1 transcriptional regulator NC_002951.3238224.p0 Protein 4e-33 41
Slin_1849 YP_003386693.1 transcriptional regulator HE999704.1.gene1528. Protein 2e-32 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Slin_1849 YP_003386693.1 transcriptional regulator VFG0596 Protein 4e-34 42
Slin_1849 YP_003386693.1 transcriptional regulator VFG0473 Protein 5e-26 42