Gene Information

Name : XALc_2598 (XALc_2598)
Accession : YP_003377069.1
Strain : Xanthomonas albilineans GPE PC73
Genome accession: NC_013722
Putative virulence/resistance : Virulence
Product : two component system regulatory protein, sigma 54-dependent
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 3081459 - 3082796 bp
Length : 1338 bp
Strand : -
Note : -

DNA sequence : 
ATGGCGCGCATCTTGATCATCGACGACGACCAGGCGTTCCTCGCCACGCTGCAGGCCACGTTGCGCTCGTTCGGTCACGA
GGCGATTGCGCTGGCCGACCCACAGGCCGGGCTGCTACGGTTGGGCGAGGGCGATATCGATCTGGTCTTCGTCGATTTCC
GCATGCCGGGGATGGATGGCATCGCGCTGATGCGCGCGCGCCAGAACGATGTGCGTGCCGCGTGCGTGCCGTTGGTGATG
CTCACCGCCCATGCGTCCAGCGGCAATACCATCGAAGCGATGAAACTCGGCGCGTTCGATCATCTGGTCAAGCCAGTTGG
CCGTGCCGACATCGCGGCGGTGGTCGAACGCGCACTGCTCAGTCGTGCCGAGCAGGCCGCGACATCCGTGCCGGCGACGC
CTGCCGAGGACGACGATGCACTGCTCGGTCACAGCGCGGCGATGCGCACCGTGCATAAGCGTATCGGCCTGGCTGCGGCC
TCCGATCTGCCGGTGTTGATCAGCGGCGAGACTGGCACGGGCAAAGAGTTGGTGGCGCGCGCCTTGCATCGTGCCAGCGC
CCGCGCCGGGCAGCCCTTCGTTGCGGTCAACTGCGCGGCCATTCCCAGCGAACTGATGGAGAGCGAACTGTTCGGTTACC
GCAAGGGGGCGTTCTCCGGCGCGGTCGCCGACCGCAGCGGCCTGATTCGCGATGCCGATGGTGGCACGTTGTTCCTCGAC
GAGATCGGCGACATGCCATTGCCGATGCAGGCCAAACTGCTGCGCTTTCTGCAGGAGGGCGAGGTGTCGCCGCTGGGCGG
GCGCGGTGCGCAGAAAGTGGACGTGCGCGTGATCGCCGCAACGCACCGCGATCTGGCCCAGGCGGTGGAGAAGGGGGGCT
TCCGTGGCGATCTGCGCTACCGGCTCAACGTGGTGCCGATCGAATTGCCGCCGCTGCGCGAGCGCGGCGACGATATCCTG
CTGCTGGCGCAACACTTTCTGGAGACTGGCGCGACCAGTGTGCAGACGTTATCGGCCACGGCGCAGGCACGGCTGCGCGT
CTATCCCTGGCCGGGCAACGTGCGCGAATTGCGTAACGCCATGCAGCGTTGCCAGGTGCTGGTGCGCGCGCCGGTGATCG
AAGCGCACGATCTGGACGAACTGCTGGCCGAGCCGAACGACGCGGCGGCTGTCGAGACCGATGCGATGACCCTGCCGCAG
GCGATTGCGCAACTGGAGCGACGCATGATCCAAGCGGCGCTGGCGCACACCCACGGCAATCGCGCCGAGGCCGCGCGCCG
GCTCGGCATCCATCGTCAGTTGCTGTACCGCAAGCTCGACGAATACGGCCTGCAGTGA

Protein sequence : 
MARILIIDDDQAFLATLQATLRSFGHEAIALADPQAGLLRLGEGDIDLVFVDFRMPGMDGIALMRARQNDVRAACVPLVM
LTAHASSGNTIEAMKLGAFDHLVKPVGRADIAAVVERALLSRAEQAATSVPATPAEDDDALLGHSAAMRTVHKRIGLAAA
SDLPVLISGETGTGKELVARALHRASARAGQPFVAVNCAAIPSELMESELFGYRKGAFSGAVADRSGLIRDADGGTLFLD
EIGDMPLPMQAKLLRFLQEGEVSPLGGRGAQKVDVRVIAATHRDLAQAVEKGGFRGDLRYRLNVVPIELPPLRERGDDIL
LLAQHFLETGATSVQTLSATAQARLRVYPWPGNVRELRNAMQRCQVLVRAPVIEAHDLDELLAEPNDAAAVETDAMTLPQ
AIAQLERRMIQAALAHTHGNRAEAARRLGIHRQLLYRKLDEYGLQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
norR ABD94719.1 putative nitric oxide reductase transcriptional regulator Not tested ExoU island B Protein 4e-57 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
XALc_2598 YP_003377069.1 two component system regulatory protein, sigma 54-dependent BAC0467 Protein 1e-73 45
XALc_2598 YP_003377069.1 two component system regulatory protein, sigma 54-dependent BAC0089 Protein 9e-66 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
XALc_2598 YP_003377069.1 two component system regulatory protein, sigma 54-dependent VFG1214 Protein 2e-72 43
XALc_2598 YP_003377069.1 two component system regulatory protein, sigma 54-dependent VFG1249 Protein 4e-61 43
XALc_2598 YP_003377069.1 two component system regulatory protein, sigma 54-dependent VFG0116 Protein 8e-67 41