Gene Information

Name : XALc_1879 (XALc_1879)
Accession : YP_003376359.1
Strain : Xanthomonas albilineans GPE PC73
Genome accession: NC_013722
Putative virulence/resistance : Unknown
Product : isxal1 transposase orf b protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 2196210 - 2197121 bp
Length : 912 bp
Strand : -
Note : -

DNA sequence : 
GTGAAGGCCTTCATCGACCAGCATCGCAATGCCTTCGGGGTCGAGCCGCTCTGCAAGGTTCTGCAGGTTGCCCCGTCGGC
CTATCGACGTCATGCCGCGCTACTGCGCGAGCCCAGCAGGCGCTGTATCCGCGCCAGACGCGACGAGCGGCTAATGCCGC
AGATTCAGCGCGTCTGGCAAGCCAACATGCAGGTCTACGGTGCCGAGAAGGTGTGGCGGCAACTGGCACGCGAAGGCGTC
GTCGTGGCCCGCTGCACGGTCGAGCGGTTGATGCGCAGCATGGGGCTGCGCGGCGTGGTGCGCGGCAAGGTCGTGCGCAC
CACCATCGGCGATGCCAAGGCCCCATGCCCGCTGGACCGGGTCAATCGGCAGTTCCGTGCCGAGCGGCCGAACCAGCTGT
GGGTCAGCGACTTCACCTACGTCTCAACCTGGCAGGGCTGGCTGTATGTGGCCTTCGTCATCGACGTGTTCGCTCGTCGC
ATCGTAGGCTGGCGAGTGAGCAGTTCTATGCGCACGGACTTCGTGCTCGATGCTTTGGAGCAGGCCCTGTATGCCCGGCA
ACCTGAGCGCGATGGCAGCTTGGTTTGCCACTCCGACAGGGGCTCGCAATACGTCAGCATCCGCTACACCGAGCGGCTGG
CCGAGGCCGGCATTGAGCCGTCGGTAGGCAGCAAGGGCGACAGCTACGACAACGCGCTGGCAGAGACCATCAACGGCTTG
TACAAAGCCGAGCTGATTCACCGCCGGGCACCCTGGAAAACTAGGGAGGCCGTCGAATTCGCCACGCTGGAGTGGGTGTC
CTGGTTCAACCACCAACGCCTGCTCCAACCCATCGGCTACATCCCGCCAGCCGAGGCCGAGGCAAACTACTACCGGCAAC
TCGCCAGTCAGACCGCCGCCGTGGCGGCCTGA

Protein sequence : 
MKAFIDQHRNAFGVEPLCKVLQVAPSAYRRHAALLREPSRRCIRARRDERLMPQIQRVWQANMQVYGAEKVWRQLAREGV
VVARCTVERLMRSMGLRGVVRGKVVRTTIGDAKAPCPLDRVNRQFRAERPNQLWVSDFTYVSTWQGWLYVAFVIDVFARR
IVGWRVSSSMRTDFVLDALEQALYARQPERDGSLVCHSDRGSQYVSIRYTERLAEAGIEPSVGSKGDSYDNALAETINGL
YKAELIHRRAPWKTREAVEFATLEWVSWFNHQRLLQPIGYIPPAEAEANYYRQLASQTAAVAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Z4334 NP_289559.1 IS629 transposase Not tested OI-122 Protein 5e-56 68
S4063 NP_839232.1 IS629 orfB Not tested SHI-2 Protein 4e-56 68
unnamed AAL67406.1 putative transposase Not tested PAI II CFT073 Protein 2e-64 67
IS629 CAI43840.1 transposase for IS629 Not tested LEE Protein 2e-71 63
Z1660 NP_287162.1 transposase for IS629 Not tested TAI Protein 3e-73 63
Z1221 NP_286756.1 transposase Not tested TAI Protein 2e-73 63
ORF_34 AAZ04444.1 putative IS629 transposase Not tested PAI I APEC-O1 Protein 4e-75 62
APECO1_3499 YP_854312.1 transposase for IS629 Not tested PAI I APEC-O1 Protein 6e-75 62
unnamed AAL67398.1 putative transposase Not tested PAI II CFT073 Protein 3e-75 62
c5213 NP_757061.1 transposase IS629 Not tested PAI II CFT073 Protein 3e-75 62
c5178 NP_757026.1 transposase IS629 Not tested PAI II CFT073 Protein 2e-74 62
ECO111_3721 YP_003236061.1 putative IS629 transposase OrfB Not tested LEE Protein 8e-75 62
ECO111_3776 YP_003236111.1 putative IS629 transposase OrfB Not tested LEE Protein 8e-75 62
c5167 NP_757015.1 transposase IS629 Not tested PAI II CFT073 Protein 3e-51 62
Z1198 NP_286733.1 transposase Not tested TAI Protein 2e-73 62
Z1638 NP_287141.1 transposase Not tested TAI Protein 2e-73 62
ECO103_3585 YP_003223443.1 IS629 transposase OrfB Not tested LEE Protein 4e-72 61
IS629 CAC37926.1 transposase for IS629 Not tested LEE Protein 6e-72 60
IS629 CAI43821.1 transposase for IS629 Not tested LEE Protein 6e-72 60
IS629 CAI43909.1 transposase for IS629 1 Not tested LEE Protein 6e-72 60
unnamed CAD42083.1 hypothetical protein Not tested PAI II 536 Protein 5e-71 60
tnp7109-25 YP_001800853.1 transposase for insertion sequence Not tested Not named Protein 3e-51 47
CDCE8392_1958 YP_005134489.1 transposase-like protein Not tested Not named Protein 4e-33 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
XALc_1879 YP_003376359.1 isxal1 transposase orf b protein VFG1602 Protein 3e-71 60