Gene Information

Name : XALc_1632 (XALc_1632)
Accession : YP_003376121.1
Strain : Xanthomonas albilineans GPE PC73
Genome accession: NC_013722
Putative virulence/resistance : Unknown
Product : phage-related integrase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 1926977 - 1928113 bp
Length : 1137 bp
Strand : -
Note : -

DNA sequence :
ATGAGACCGGATGGTGCCCGCTGGTGGCGCTGGGATTACCGCCGACCGAACACCGGCAAGCGCAACACGCTGAGCCTTGG
CACCTACCCCGATACCGGCCTTGCCGATGCACGGGATAAGCGCGACGCCGCGCGCAAGCTGCTGGCTGCTGGTGTGGACC
CAGGCGAGCAACGGAAACGGGCCAAGGAGCAGGCGGCCATGGTGGCTCCCGCTGGGGAGACGTTCGAGACCGTGGCCCGC
GCGTGGATGGCCCGGCAGACCGTCGCGCGCGTCACGGCGGAGAAGAATCGCTGGTTGCTGGAAACCTTCCTGTTCCCCGA
GATCGGCAGCCGACCCATTGGCGAGATCACGCCCCGTGAGTTGCTGGATGCCCTGCGCAAGATTGAAGCCACCGGCAAGC
TGGAAACTGCTGGCCGTGCCAAGATCAAGGCCGGCCAGGTGTTTCGTTACGCCATGCTGGAAGGCAAGGCGGAGATTGAT
CCCACCGCCAGCCTGCGAGGCGCGCTCAAAACCGTCAAGGCCCGCCACCATGCCGCCGTAACCGATCCAGTCAAGATCGG
ACAGTTGTTGCGCGCCATCGAGGGCTTCATTGGGCAGCCCGTGACCCATGCAGCATTGAAGCTGGCCCCGCTGGTGTTCG
TGCGCCCCGGCGAGCTACGGGCGGCGGAGTGGGGGGAAATCGACCTGGATGCCGCCATGTGGCGTATCCGCCCCGAGCGG
ATGAAGATGAAGGCGGCGCATTTAGTGCCCCTGTCCAGCCAAGCTGTGGCGATCCTGCGCGATCTGCATGCACTGACCGG
TGGTGGCCCCCATGTATTCCCCGGCCTGCGCCCGAACCGCCCCATGTCGGAAAACACCATCAATTCCGCGCTGCGCGCAC
TGGGCTATTCCGGTGATGAGATGACGGGTCACGGCTTCCGCAGCATGGCGGCGACGCGGCTTAATGAAATGGGCTGGAAT
GCCGACGCCATCGAGCGACAACTGGCCCACGCCGAAACCAATAAGGTCCGCGAGGCATACACGCACGCGGCGCAGTACCT
GCCCGAGCGCGTGCGCATGATGCAGGCATGGGCGGATTATCTGGACAGCTTACGCACGGGCGGTAACGTCGTACCGCTGC
GGGCCAAGGCCGGCTAA

Protein sequence :
MRPDGARWWRWDYRRPNTGKRNTLSLGTYPDTGLADARDKRDAARKLLAAGVDPGEQRKRAKEQAAMVAPAGETFETVAR
AWMARQTVARVTAEKNRWLLETFLFPEIGSRPIGEITPRELLDALRKIEATGKLETAGRAKIKAGQVFRYAMLEGKAEID
PTASLRGALKTVKARHHAAVTDPVKIGQLLRAIEGFIGQPVTHAALKLAPLVFVRPGELRAAEWGEIDLDAAMWRIRPER
MKMKAAHLVPLSSQAVAILRDLHALTGGGPHVFPGLRPNRPMSENTINSALRALGYSGDEMTGHGFRSMAATRLNEMGWN
ADAIERQLAHAETNKVREAYTHAAQYLPERVRMMQAWADYLDSLRTGGNVVPLRAKAG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 1e-59 45
c5216 NP_757064.1 prophage P4 integrase Not tested PAI II CFT073 Protein 8e-60 45
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 8e-60 45
c3556 NP_755431.1 prophage P4 integrase Not tested PAI I CFT073 Protein 3e-59 45
int AAK16198.1 Int Not tested PAI-I AL862 Protein 2e-59 45
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 2e-59 45
ECUMN_3322 YP_002414004.1 integrase Not tested Not named Protein 1e-58 45
int AAL51003.1 CP4-like integrase Not tested LEE Protein 1e-58 45
int AAK00456.1 Int Not tested SHI-1 Protein 1e-59 44
int CAC81896.1 integrase Not tested LEE II Protein 4e-59 44
S4822 NP_838459.1 P4-type integrase Not tested SHI-1 Protein 1e-59 44
SF2964 NP_708738.1 P4-type integrase Not tested SHI-1 Protein 1e-59 44
ECO111_3718 YP_003236059.1 putative integrase Not tested LEE Protein 1e-58 44
ECO26_5300 YP_003232178.1 integrase Not tested LEE Protein 5e-59 44
int-phe AAL57571.1 CP4-like integrase Not tested LEE Protein 3e-59 44
int AAL51028.1 CP4-like integrase Not tested LEE Protein 3e-59 44
int-phe AAL60261.1 Int-phe Not tested LEE Protein 3e-59 44
Z4313 NP_289539.1 pathogenicity island integrase Not tested OI-122 Protein 2e-58 44
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 3e-58 44
intP4 CAE85151.1 CP4 integrase protein Not tested PAI V 536 Protein 2e-59 44
ECO103_3550 YP_003223418.1 integrase Not tested LEE Protein 5e-59 44
int AAD44730.1 Int Not tested SHI-2 Protein 2e-55 43
int CAC39282.1 integrase Not tested LPA Protein 1e-55 43
aec33 AAW51716.1 Int Not tested AGI-3 Protein 1e-55 43
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 7e-56 43
ECs4534 NP_312561.1 integrase Not tested LEE Protein 7e-56 43
int AAC31482.1 CP4-like integrase Not tested LEE Protein 5e-56 43
int ACU09430.1 integrase Not tested LEE Protein 5e-56 43
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 1e-62 43
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 1e-62 43
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 8e-55 42
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 6e-55 42
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 8e-55 42
unnamed AFX83955.1 integrase Not tested SE-PAI Protein 1e-54 42
ESA_03025 YP_001439090.1 hypothetical protein Not tested Not named Protein 1e-53 42
int NP_458759.1 bacteriophage integrase Not tested SPI-7 Protein 4e-52 42
int NP_807963.1 bacteriophage integrase Not tested SPI-7 Protein 4e-52 42
intB CAD42017.1 bacteriophage P4 integrase Not tested PAI II 536 Protein 6e-60 41
STY4821 NP_458899.1 integrase Not tested SPI-10 Protein 2e-57 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
XALc_1632 YP_003376121.1 phage-related integrase VFG1693 Protein 1e-59 45
XALc_1632 YP_003376121.1 phage-related integrase VFG0626 Protein 5e-60 44
XALc_1632 YP_003376121.1 phage-related integrase VFG0783 Protein 3e-56 43
XALc_1632 YP_003376121.1 phage-related integrase VFG0598 Protein 3e-55 42
XALc_1632 YP_003376121.1 phage-related integrase VFG1536 Protein 3e-60 41