|
Name : leuS (HMPREF0424_0944) Accession : YP_003374157.1 Strain : Gardnerella vaginalis 409-05 Genome accession: NC_013721 Putative virulence/resistance : Unknown Product : leucyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG0495 EC number : 6.1.1.4 Position : 1084873 - 1087857 bp Length : 2985 bp Strand : - Note : identified by match to protein family HMM PF08264; match to protein family HMM PF09334; match to protein family HMM TIGR00396 DNA sequence : ATGAACGACAACGATCAACAGTATGCAACAGCTGACAACAAAGCTACTATTGCTGAGCCAGCTTTTCGTTACAACGCGCA GCTCGCACAAGATATTGAGCAGCGCTGGCAAAAAACCTGGGATGAACAAGGTACGTTCTGGGCTGCTAATGTTAAAGGCG ATTTGAAGGATGGTGAAGGCAAGCTTGCTGACGGTCGTCCTTCTTTCTTTGCAATGGACATGTTCCCGTATCCTTCCGGC AAAGGCTTACACGTTGGACATCCTCTTGGATATTTGGCAACGGATGTTGTAAGCCGCTACCATCGCATGAAGGGTGAGAA TGTTCTTCATGCAATGGGTTACGACGCTTTTGGTTTGCCGGCGGAACAGTACGCTGTTCAAACTGGTCAGCATCCGCGCA TCACCACTGAGGCAAATATTGCTAATATGCGCAGGCAGTTGCATCGTATGGGCTTGAGTTTTGACGATCGTAGGTCTTTT GCAACGATTGACACAAATTATGTGCGTTGGACGCAATGGATTTTCTCGAAGCTTTATGACGCTTGGTATGACACTGATTT TGTGCGCAAAGACGGCGGAAAGGGTTCTGCTCGTCCGATTGCTGAACTCGTTGATGAGTTTAAGAGCGGCAAGCGCGAAA TTCCTGGTTTTGCAGGCAAAAAGTGGGAAGAGCTTAATAAAGTAGAGCAAGCGGATGTATTAAACAATTTCCGCATTGCT TATATTTCTAAATCTCCTGTAAATTGGTGCCCAGGCTTGGGAACTGTGCTTGCAAACGAGGAAGTTACTGCAGAAGGTAA GTCTGAACGCGGAAACTTCCCAGTATTCCAGCGCAACCTTCGCCAGTGGTCCATGCGAATTACCGCTTATGGACACCGCT TGGTGGAAGATTTGAACACTATTGATTGGTCAGAAAAAGTTAAGCTTATGCAGCGAAACTGGATCGGCGAATCTCACGGT GCATCTGTGCACTTTGAAGTGCCATGTGCGGACGGCGAAACGCGCGATTTGGAAGTGTACACTACTCGTCCAGACACGCT TTTTGGTACAACGTTTGCGGTTGTTTCCGTAGATCACCCAATTCTTGAGCATGTTCCAGAAGCTTGGGGTGCGGACGTTC CAGAAAGCTGGAAGGGCGGTTACGCAAGTCTTAAAGAAGGCTTGGCAGAGTATCAAGCTCAAGCTCGCGCGAAGACTGCT AAAGATCGCACGGAAGATGCAGGAGCAAAAACCGGCTTGTTTACTGGTCTTTACGCAATTAATCCTGTAAATGGAGCAAA ACTTCCGCTGTTTGCTGCTGACTACGTGCTTATGGGTTACGGTACAGGCGCAATTATGGCGGTTCCTGGCGGCGACCAGC GCGATTATGATTTCGCAAAAGCATTCGGTTTGCCAGTAATTTACACTGTTGAGCCTTTGCCTGATTCCGAAGAAAAGTTG GCAGATTACGAAGGTAAAGCTCCGTTTGTTTCTCACGACGGAATTGTTATTAATTCAGCAGTAGAACATACGCACAAGCT TGGTGACGCTTTGTCTATTAACGGTTTGCGCGTAGACGAAGCTATTAAAAAGGTGACTACTTGGCTTGAAGCTGCAGGCG TAGGAAAAGGTAGGGTTTCTTACCGACTTCGCGACTGGCTGTTCTCTCGCCAGCGCTACTGGGGTGAGCCATTCCCAATC GTTTATGACGAAGATGGTGTTGCTCACTTAGTGCCAGATAGCGAGCTTCCAATTGCATTGCCGGACGTTCCTGACTATCA GCCAAAAACTTACGCTCCAGACGATGCAAATTCGGAGCCTGAAGCACCTTTGAGCCGAAACGAAGATTGGGTAAAAGTTC AGCTCGACCTTGGCGATGGCGTAAAAACCTACTATCGTGACACCAACACTATGCCGAACTGGGCTGGTTCTTGCTGGTAT TACATGCGCTACTTGGATCCAAACGATGCTGAGCATATGGTTGACAGCGATGAATACGACTACTGGATGGGCACAAACCG TCCAGGAAAAGAGCACGTATCTGGAGGCGTTGACCTTTACGTTGGTGGTGTAGAGCATGCAGTTTTGCACTTGCTTTACT CGCGCTTCTGGCATAAGGCGCTTTACGACTTGGGTTACGTGGATTCTGCTGAACCATTCCACCGCTTGTTTAACCAGGGT ATGATTCAAGCTTACGCTTACACGGATGAGCGCGGACAGTACGTTCCTGCTGACGAGGTTGAAGAAGGTGCTTCAAACAG CGCTGGTGAGCCAACCTTTACATGGCATGGCGAGAGCGTGAACCGCGAGTTCGGCAAAATGGGCAAGAGCTTAAAGAATA TTGTGACTCCAGATTACATGTACGAAAACTACGGTGCAGATACGTTCCGCTTGTACGAAATGAGCATGGGTCCGCTTTCT GAGTCTCGTCCATGGAACACGCGTAACGTTGTTGGTGGCATGCGATTCTTGCAGCGCTTGTGGCGTAACGTTGTGAACGA AGAAACCGGAGCTTGCGTGGTAACTGACGACGCTTTGGATGAGAAGACGTTGAAGATTCTTAACAACACAATTGCAGAAG TGACTGTGGAAATGGAAGCAATGCGTCCAAATACTGCAATTGCTAAGCTGATTGTGCTTAACAACCACTTGACTTCGCTT CCTCACGTGCCGCGAGCAGCTGTCGAGCCGCTGGTTCTTATGCTGGCTCCAATCGCGCCGCATATTTGCGAAGAAATGTG GAGCAAGCTTGGACACGCAAAGTCGATTGCTCACGCAGATTGGCCTGTTGCGGATTCTCGCTACGTTGGTGAGGATACTG TTACTGCCGTTGTGCAAATAAAGGGCAAGGTTCGAGCAAAGCTTGAAGTTGATCCAAATATTGACGCTTCTGAACTTGAA AAGCTTGCGCTAGAAGCTGTAGCTGATCGCTTGGGCGGTAAGGCTCCGCGCAAGGTGATTGTGAAGGCTCCGAAGATTGT GTCTATTGTGCCGGACGAAAGCTGA Protein sequence : MNDNDQQYATADNKATIAEPAFRYNAQLAQDIEQRWQKTWDEQGTFWAANVKGDLKDGEGKLADGRPSFFAMDMFPYPSG KGLHVGHPLGYLATDVVSRYHRMKGENVLHAMGYDAFGLPAEQYAVQTGQHPRITTEANIANMRRQLHRMGLSFDDRRSF ATIDTNYVRWTQWIFSKLYDAWYDTDFVRKDGGKGSARPIAELVDEFKSGKREIPGFAGKKWEELNKVEQADVLNNFRIA YISKSPVNWCPGLGTVLANEEVTAEGKSERGNFPVFQRNLRQWSMRITAYGHRLVEDLNTIDWSEKVKLMQRNWIGESHG ASVHFEVPCADGETRDLEVYTTRPDTLFGTTFAVVSVDHPILEHVPEAWGADVPESWKGGYASLKEGLAEYQAQARAKTA KDRTEDAGAKTGLFTGLYAINPVNGAKLPLFAADYVLMGYGTGAIMAVPGGDQRDYDFAKAFGLPVIYTVEPLPDSEEKL ADYEGKAPFVSHDGIVINSAVEHTHKLGDALSINGLRVDEAIKKVTTWLEAAGVGKGRVSYRLRDWLFSRQRYWGEPFPI VYDEDGVAHLVPDSELPIALPDVPDYQPKTYAPDDANSEPEAPLSRNEDWVKVQLDLGDGVKTYYRDTNTMPNWAGSCWY YMRYLDPNDAEHMVDSDEYDYWMGTNRPGKEHVSGGVDLYVGGVEHAVLHLLYSRFWHKALYDLGYVDSAEPFHRLFNQG MIQAYAYTDERGQYVPADEVEEGASNSAGEPTFTWHGESVNREFGKMGKSLKNIVTPDYMYENYGADTFRLYEMSMGPLS ESRPWNTRNVVGGMRFLQRLWRNVVNEETGACVVTDDALDEKTLKILNNTIAEVTVEMEAMRPNTAIAKLIVLNNHLTSL PHVPRAAVEPLVLMLAPIAPHICEEMWSKLGHAKSIAHADWPVADSRYVGEDTVTAVVQIKGKVRAKLEVDPNIDASELE KLALEAVADRLGGKAPRKVIVKAPKIVSIVPDES |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| leuS | YP_281511.2 | leucyl-tRNA synthetase | Not tested | Not named | Protein | 6e-137 | 45 |
