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Name : tkt (HMPREF0424_0902) Accession : YP_003374116.1 Strain : Gardnerella vaginalis 409-05 Genome accession: NC_013721 Putative virulence/resistance : Unknown Product : transketolase Function : - COG functional category : G : Carbohydrate transport and metabolism COG ID : COG0021 EC number : 2.2.1.1 Position : 1027883 - 1029982 bp Length : 2100 bp Strand : + Note : identified by match to protein family HMM PF00456; match to protein family HMM PF02779; match to protein family HMM PF02780; match to protein family HMM TIGR00232 DNA sequence : ATGACCGATTTCAACTGGTCTGCATTAGACGAGCGCGCCGTAAAAATGGCGAAGGTTCTCTCGGCTGATGCTGTTGAGCG AGCAGGACACGGACATCCTGGCTCCCCTGTTTCATTAGCACCGATTGCGTACACATTGTACCAGCATTTCATTAAGCACG ATCCAGCTGACCCAAAGTGGGCTGGCCGCGATCGTTTTATTCTTTCTGGCGGTCACGCTTCGCTTACGCAATACGTGCAG TTGTTCTTCTCTGGATACGGCTTGACTCTTGACGATCTCAAGTATTTCCGTGGCGGTGCAGACACGCGTACTCCAGGTCA CCCAGAATACGGCTTGACTCCAGGCATCGAAATGACTACTGGCCCACTCGGTCAGGGTCTTGCTTCCGCTGTTGGTTTCG CTTACGGCCAGCGCTTTGAGCGTGGACTTCTCGATCCAGAAGCTCCAGCTGGCACCTCCCCATTCGATCACAAGGTTTGG GTTATCTGCGGCGAAGGCGACGTTGAGGAAGGCGTTTCTTCTGAAGCTGCTTCCTTGGCTGGAAACCAAAAGCTCGGCAA TTTGACCGTAATCTTCGATGCAAACCACATTCAGATTGAAGGCGACACTAAGCTCACCTTCTCTGAAGATATTCTTGCTC GTTACCGTGCATACGGTTGGTACACCGATGAAGTGAGCTTCATCCAGCCAGACGGCTCCTATAAGGAAGACGTTCAGGCT TTGGCTGCAGCTATTGAAAAGGCTCAGGAAGTTACCGATAAGCCTCACTTCATTAAGGTTAATACTTTGATTGCTTGGCC AACCCCAGGCAAGACCAACAACGAAGCTTCCCACGGCTCCAAGCTTGGCGAGGAAGCTGTGAAGGGCTTGAAGGAACTTT GCGGTTTCGACCCAGAAGTTTCGTTCCCAATCGACGAAGAAGCTTTGGCTCACGCTCGCAAGGTTGCAGAGCGCGGCTTG GCTGCTCACAAGGCTTGGGACGAAGCTCTTGCAAAGTGGGCTGCCGCCAACCCAGATAAGGCTGCTCTTTACGAGCGTCT TAAGGCTGGCAAGCTTCCTGAAGGCTTCGACAAGGCTATTGACGACTTGGTTGCTGGCTTCGAAGTTGGCTCTAAGGTTG CTACCCGTAAGGCTTCCGGCGCAGTTCTTAACGCAATTGCTGCTGTTATGCCAGAACTTTGGGGCGGTTCCGCTGATTTG GGCGGCTCCAATAACACCAACATTAAGGGCGCTGACTCCTTCGGCCCATCCGAAGACGCAACCCGCACTTGGCCAAACGT TTCCGAGTACGGTCGCCAGCTTCACTTTGGTGTGCGCGAGTTCGCAATGGGTGCTATTACCAACGGCATTTTGCTTGGTT CTGACACTCGACCATTCAATGGTACATTCTTCCAGTTCTCTGACTACGAGCGTCCAGCAGTTCGCTTGGCTGCTTTGATG GAGATTCCAAACCTCTACGTTTGGACTCACGACTCTGTAGCCTTGGGCGAAGATGGTCCAACTCACCAGCCAATCGAACA CTTGGCTGCTTTCCGCGCTATTCCTCAGCTTGAGGTTGTGCGCCCTGCAGATGAGTACGAAACTGCTGAAGCTTACCGTT ACTTCTTCGAGAAGAAAAACAGCTATCCAACTGCTATGATTTTGACCCGCCAGGGCGTTCCAACCCTCGCTGAGACTGCT GAAAAGGCTCGCGAAGGCGTGAAGCACGGCGCTTACGTTTTGGTTGATTGCGAAGGCACTCCAGACGTAATCATCATGGC AACCGGTTCCGAAGTTCAGTGGGCTGTTGCTGGTGCCAAGACTTTGGCTGCTGAAGGCATTAAGGCTCGCGTTCTTTCCA TGCCATCTCTCGAATGGTTCGAAGAGCAGGACGAAGAGTACAAGGAAGCAATCTTGCCAAAGTCCGTCAAGGCTCGCGTT TCCATCGAAGCTGGCTTGGCATTGCCTTGGTACAAGTATCTTGGCGATTGCGGCAAGGCTGTTTCTATCGAACAGTACGG CTTGCAGGGTGACGGCGGTCAGAACATGATTGACTTGGGCATTACTGCTGAGCACGTAGTAGAAGCTGCTAAGGCTTCTA TCGAAGAAGCTCGCGCCTAA Protein sequence : MTDFNWSALDERAVKMAKVLSADAVERAGHGHPGSPVSLAPIAYTLYQHFIKHDPADPKWAGRDRFILSGGHASLTQYVQ LFFSGYGLTLDDLKYFRGGADTRTPGHPEYGLTPGIEMTTGPLGQGLASAVGFAYGQRFERGLLDPEAPAGTSPFDHKVW VICGEGDVEEGVSSEAASLAGNQKLGNLTVIFDANHIQIEGDTKLTFSEDILARYRAYGWYTDEVSFIQPDGSYKEDVQA LAAAIEKAQEVTDKPHFIKVNTLIAWPTPGKTNNEASHGSKLGEEAVKGLKELCGFDPEVSFPIDEEALAHARKVAERGL AAHKAWDEALAKWAAANPDKAALYERLKAGKLPEGFDKAIDDLVAGFEVGSKVATRKASGAVLNAIAAVMPELWGGSADL GGSNNTNIKGADSFGPSEDATRTWPNVSEYGRQLHFGVREFAMGAITNGILLGSDTRPFNGTFFQFSDYERPAVRLAALM EIPNLYVWTHDSVALGEDGPTHQPIEHLAAFRAIPQLEVVRPADEYETAEAYRYFFEKKNSYPTAMILTRQGVPTLAETA EKAREGVKHGAYVLVDCEGTPDVIIMATGSEVQWAVAGAKTLAAEGIKARVLSMPSLEWFEEQDEEYKEAILPKSVKARV SIEAGLALPWYKYLGDCGKAVSIEQYGLQGDGGQNMIDLGITAEHVVEAAKASIEEARA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| tktA | AAO17218.1 | TktA | Not tested | tcd island | Protein | 9e-101 | 42 |
| APECO1_2641 | YP_859417.1 | transketolase | Not tested | Not named | Protein | 2e-99 | 41 |
