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Name : thiC (HMPREF0424_0892) Accession : YP_003374107.1 Strain : Gardnerella vaginalis 409-05 Genome accession: NC_013721 Putative virulence/resistance : Unknown Product : thiamine biosynthesis protein ThiC Function : - COG functional category : H : Coenzyme transport and metabolism COG ID : COG0422 EC number : - Position : 1012629 - 1015286 bp Length : 2658 bp Strand : + Note : identified by match to protein family HMM PF01964; match to protein family HMM PF02581; match to protein family HMM TIGR00190 DNA sequence : ATGACATCGAATTATCCGTACGCATCAATGCGTAATCAATTTAATCTAAGCGCCTGCTTTATTGCAGACCCACAAGCTTG TAATAATCGTCCGCTTACCGATATTGTCGATGATGCTTTGCGCGCTGGAGCGACTTTTATTCGTCTTCATTGCAACAATG AAAACGCTAAAGAAATCACTACTATTGCACGCGATATTGCACAAATCATCGAAGACAATAACAAATGCGATTCTGTAACT TTTGTTATCGACGAGCGTGTTGATGTCGTTTGGCAAGCTCGCAATCAAAGCATCAAAGTTGACGGAGTGCATTTAGCACA AAGCGACATGGAGCCTAGAGAGGCTCGCGCTCTTCTTGGCGAAGATGCTGTAATCGGCTTATCTGTTGAAACCGAAAGCT TAGTTAAAGTAATAAACGAACTTCCAGATGGATGCATTGATTACATTTGCGTAACAGCAATGCGCAATCCTGAAGAAGGA TGCGAAAGCACTACTGCCGCTTACGAATTGGAAGCAAATCACACAACGCTGGACGAAGCGAAAATTAATACGATTTGTTC CGCAAGTGATTTTCCAGTTCTAGTTGGCGGAAGAACTGCACTCGACGATATCGATACAATCGCTCACACCAAGGCTGCAG GATGGTTCGTTTCTGAAGCATTGTATTCTTCAGAAACACCAGAATCAACTATGCGTGAATTTGTTGAACATTGGAAAGCT GTGCGAGGTGAAGAAAAGCACGGCTACGCTAAGCGAGTGATAGTTGCAGAAAATTCTGAATCAAAATCTTCAGAAACTCA AGAAAAGAAGCCAACTTTTATTAATGCGAAAGAAGCAAAGGATGCTGCGAAATTAGCTAAACAACAGCGAGTTGACATTG CAGCTCGCGGATGCACTCAGCGCGATAAAGCTCATATTCGCAAAACAACTCCAATTCATTTTGAGTATGAATATGGTTCT TATGATTTGGAAGTTCCTTATACGGAAATTAAGCTTTCGGATACTCCTGGCGTAGGTCCTAACCCGCCTTTTAAGGATTA CAATACAGAAGGTCCAAAGTGCGATCCGAAGGAAGGTTTGGCTCCGCTTCGCCTTGACTGGATTCGCGACCGCGGTGACG TTGTGGAATATGAGGGTCGCAGGCGCAATCTTCAAGACGACGGCAAGCGCGCAATTAAGCGAGGCAAAGCTTCTAAAGAA TGGCGTGGACGCACGCATAAGCCAATGAAGGGCGCGGATCATCCGATTACACAAATGTGGTACGCTCGCCACGGAATCAC TACTCCGGAAATGCAATATGTTGCAACGCGCGAAAATTGCGATGTAGAGCTGGTTCGCGAAGAAGTTGCAGCCGGACGTG CTGTAATTCCTTGCAATATTAACCATCCTGAAGCTGAACCTATGATTATTGGCTCGCGCTTCTTGACTAAGCTCAACGCA AACATGGGTAATTCTGCTGTTACGTCATCTATCGACGAAGAAGTAGAAAAGCTTACGTGGGCCACGAAGTGGGGTGCGGA TACCGTTATGGATCTTTCCACCGGTAACGATATTCACACAACGCGCGAATGGATTTTGCGCAACTCCCCTGTGCCAATTG GAACAGTGCCAATGTATCAGGCTTTGGAAAAGGTTGAGGATGATGCTTCTAAGCTCAGCTGGGAGCTTTTCCGCGACACT GTTATTGAGCAGTGCGAGCAGGGCGTTGACTACATGACTATTCACGCTGGCGTGCTTCTTCGCTACGTGCCGCTTACTGC AAACCGCGTAACCGGTATTGTTTCTCGTGGTGGCTCAATTATGGCTGAATGGTGCTTGCAACATCATCAAGAGAGCTTCT TGTATACGCACTTTGAAGAATTATGCGAGATTTTCGCAAAGTACGATGTTGCATTCTCTTTGGGTGATGGTTTGCGTCCA GGTAGCTTGGCTGATGCTAACGATGCGGCTCAGCTTTCCGAGCTTATGACGCTTGGCGAGCTTACGAAGATCGCTTGGAA GCATGACGTACAGGTGATGATTGAAGGTCCTGGTCACGTGCCATTCGACACTGTGCGTATGAATATTGAGATGGAAAAGG CAATTTGCCAGAATGCTCCATTCTATACGCTTGGTCCTTTGACTACGGATACCGCACCTGGCTATGACCACATTACTTCC GCAATTGGTGGCGTGGAGATTGCGCGATACGGCACCGCAATGCTTTGCTATGTGACTCCTAAGGAACATTTGGGGTTGCC TAACAAGGATGACGTGAAGCAAGGCGTGATTGCGTATAAGATCGCTTGCCACGCAGCTGATCTTGCTAAGCATCATCCAC ATGCTATGGATCGCGACAACGCAATCAGTAAGGCTCGCTTTGAGTTCCGCTGGTTGGATCAGTTCAACTTAAGCTATGAT CCAGATACCGCAATCGCCTTCCACGACGAAACACTTCCTGCAGAACCAGCAAAAATGGCGCACTTCTGCTCGATGTGCGG ACCAAAGTTCTGCTCGATGGCTATTTCGCAAAATATTCGTAAGCGTTTTGGCGGAGCAGCTCAGCAGGAGCAGCTCGTTG AAGAAGCACGCAGTCAGGCAATTGCCGATGGTATGAAAGAGATGAGCAAAAAGTTCCAAGAATCCGGCTCATCGTTGTAT CAAAGCGTGAAAGCATAA Protein sequence : MTSNYPYASMRNQFNLSACFIADPQACNNRPLTDIVDDALRAGATFIRLHCNNENAKEITTIARDIAQIIEDNNKCDSVT FVIDERVDVVWQARNQSIKVDGVHLAQSDMEPREARALLGEDAVIGLSVETESLVKVINELPDGCIDYICVTAMRNPEEG CESTTAAYELEANHTTLDEAKINTICSASDFPVLVGGRTALDDIDTIAHTKAAGWFVSEALYSSETPESTMREFVEHWKA VRGEEKHGYAKRVIVAENSESKSSETQEKKPTFINAKEAKDAAKLAKQQRVDIAARGCTQRDKAHIRKTTPIHFEYEYGS YDLEVPYTEIKLSDTPGVGPNPPFKDYNTEGPKCDPKEGLAPLRLDWIRDRGDVVEYEGRRRNLQDDGKRAIKRGKASKE WRGRTHKPMKGADHPITQMWYARHGITTPEMQYVATRENCDVELVREEVAAGRAVIPCNINHPEAEPMIIGSRFLTKLNA NMGNSAVTSSIDEEVEKLTWATKWGADTVMDLSTGNDIHTTREWILRNSPVPIGTVPMYQALEKVEDDASKLSWELFRDT VIEQCEQGVDYMTIHAGVLLRYVPLTANRVTGIVSRGGSIMAEWCLQHHQESFLYTHFEELCEIFAKYDVAFSLGDGLRP GSLADANDAAQLSELMTLGELTKIAWKHDVQVMIEGPGHVPFDTVRMNIEMEKAICQNAPFYTLGPLTTDTAPGYDHITS AIGGVEIARYGTAMLCYVTPKEHLGLPNKDDVKQGVIAYKIACHAADLAKHHPHAMDRDNAISKARFEFRWLDQFNLSYD PDTAIAFHDETLPAEPAKMAHFCSMCGPKFCSMAISQNIRKRFGGAAQQEQLVEEARSQAIADGMKEMSKKFQESGSSLY QSVKA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| thiC | YP_001598318.1 | thiamine biosynthesis protein ThiC | Not tested | MDA | Protein | 6e-155 | 55 |
