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Name : argH (HMPREF0424_0675) Accession : YP_003373903.1 Strain : Gardnerella vaginalis 409-05 Genome accession: NC_013721 Putative virulence/resistance : Unknown Product : argininosuccinate lyase Function : - COG functional category : E : Amino acid transport and metabolism COG ID : COG0165 EC number : 4.3.2.1 Position : 760682 - 762199 bp Length : 1518 bp Strand : + Note : identified by match to protein family HMM PF00206; match to protein family HMM TIGR00838 DNA sequence : ATGCACGATGCAACAAAAGCAGCAGCCGCAGAACTAGAAAATAATGAAAGTAATAATACTAATCACCCTATTGCATTGTG GGGTGGACGATTTAGTTCAGGTCCTTCAGCAGAGCTGACGAAACTAAGCAAGTCCACACAATTTGATTGGCGATTAGCGG ATGATGATATTGCTGGTTCTAGAGCTCATGCGCATGCGTTGCATCGTGCAGGTCTTCTTAACGAAAAAGAGTATGCTGAT TTATCTTGTGCATTAGATGAATTGCAAAAGCGTGTAGATGATGAAACTTTTGCACCCATTGAGGAAGATGAAGATGAAGC TACAGCATTAGAGCGCGGTTTACTTGAAATTGCTGGAAATGAGCTTGGTGGAAAGCTTCGTGCAGGTCGATCTAGGAATG ATCAAATTGCAGCTTTAATACGTATGTTTTTGCGTAGGCATGCGCGCGTTATTGCATCATTATTGTTGTCAGTTTGCCAA GCGTTGCTGAATCAATCAAAAAATGCAAAAGACGCAGTGATGCCGGGTCGCACTCACATGCAACATGCTCAACCAATTTT GCTTGCGCATCAGTTAATGGCACATGTTTGGCCGCTTTTACGAGATGTAAATCGCTTCATAGATTGGGATTTGCGTGCAG ATGAAAGCCCTTATGGAGCAGGAGCTTTGGCAGGCAATACTCTTGGTCTTAATCCAGAAGAAGTAGCTAAAGAGCTTGGT TTTTCTAAAGTTTGCGCTAATTCTATAGACGCAACTGCAAGTAGAGACTTAGTCGCAGAATTTTCATTCATCGCAGCAAT GATTGGCGTTGATATATCACGATTAAGTGAAGAAATTATTATTTGGAATACTCAAGAATTTGCATTTGTTCGTTTAGATG ATGCTTATTCAACTGGCTCATCGATTATGCCTCAAAAAAAGAATCCAGATATTGCTGAACTTGCTCGCGGTAAAGCTGGT AGATTAATAGGCGATTTAACTGGTTTAATGGCAACTCTTAAAGGTCTTCCTACTGCTTATGCTCGCGATTTGCAAGAAGA TAAAGAAGCTGTTTTTGATCAAATTGACACTTTAGAAGTGCTTCTTCCAGCTTTTGCTGGAATGGTAGAAACTATGAAAT TTGATCTAAATAGACTTTATGAACAGTCTTCTACTGGTTTCGCTCTTGCTACAGATATTGCAGAATGGCTTGTAAAAAAG GGTGTTCCATTCCGTAACGCTCATACTTTGTCTGGTTTGTGTGTAAAGCGAGCTGAGGGAATTGGGGGAGATCTTGCTGA TTTAAGCGATGATGATTTTTCAAATATTCTAAGCGGTTTTGTTGATAGCGCAGAAATTGCGAATATCAGAACAATATTGA CTAGTGCTGGATCTGTGTCTGCCAGATGCGGTCGTGGCGGTACAGCCTTCGCACGAGTTAAAGAGCAAATTGTAGAGGCT GAAAATGCAATGGATAATTATTATAAATTTGCAAATTCAAAAAGCGATGGTTCTGCTTATATCTCGCCTATAAAATAA Protein sequence : MHDATKAAAAELENNESNNTNHPIALWGGRFSSGPSAELTKLSKSTQFDWRLADDDIAGSRAHAHALHRAGLLNEKEYAD LSCALDELQKRVDDETFAPIEEDEDEATALERGLLEIAGNELGGKLRAGRSRNDQIAALIRMFLRRHARVIASLLLSVCQ ALLNQSKNAKDAVMPGRTHMQHAQPILLAHQLMAHVWPLLRDVNRFIDWDLRADESPYGAGALAGNTLGLNPEEVAKELG FSKVCANSIDATASRDLVAEFSFIAAMIGVDISRLSEEIIIWNTQEFAFVRLDDAYSTGSSIMPQKKNPDIAELARGKAG RLIGDLTGLMATLKGLPTAYARDLQEDKEAVFDQIDTLEVLLPAFAGMVETMKFDLNRLYEQSSTGFALATDIAEWLVKK GVPFRNAHTLSGLCVKRAEGIGGDLADLSDDDFSNILSGFVDSAEIANIRTILTSAGSVSARCGRGGTAFARVKEQIVEA ENAMDNYYKFANSKSDGSAYISPIK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00324 | YP_008207789.1 | Argininosuccinate lyase | Not tested | AbaR25 | Protein | 3e-61 | 41 |
| BJAB0868_00328 | YP_008211654.1 | Argininosuccinate lyase | Not tested | AbaR26 | Protein | 3e-61 | 41 |
