Gene Information

Name : HMPREF0424_0641 (HMPREF0424_0641)
Accession : YP_003373871.1
Strain : Gardnerella vaginalis 409-05
Genome accession: NC_013721
Putative virulence/resistance : Resistance
Product : ABC transporter ATP-binding protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 714952 - 715791 bp
Length : 840 bp
Strand : +
Note : identified by match to protein family HMM PF00005

DNA sequence : 
ATGAACAGTCCGTACGAAACAAGCTCATACGAGCAAGAAAATGCTTTAGATTTTAGAGCAGATTTTAACCAAAACTTGAT
TGGTGAAACAGCAGTTGCAGCTTTGCATGTTGTTAAAGATTTTGGCAAGGGTGCAGGCATTGTTCACGCTTTGCGAGATG
TAAGCGTAAGTTTTGAACGCGGCAAGTTTACGGCGATTATGGGTCCTTCTGGTTCCGGAAAGTCAACTTTAATGCACTCT
TTGGCTGGTCTTGACAGCGTTAATTCTGGAAAAGTTTTGGTAGATGGCCTAGATATTACAGGCATGAGCGATAAGCAGCT
TACGCTTATGCGACGCGAAATGGTCGGATTTATTTTCCAAAGTTTTAATCTTCTTCCAATGTTTAGCGCTGAGCAAAATA
TTCTCATGCCTCTTACTTTGGCGGGCAAAAAGCCAGATAAGCAATGGTTTAATACTTTGGTTTTAACTCTTGGATTGCAA
AATCGATTACATCACAGACCTGCTGAGCTTTCAGGCGGTCAGCGTCAACGTGTTGCAATTGCTCGAGCTTTAATCTCTAA
GCCTTCCGTAGTTTTTGCAGACGAGCCTACCGGAAATCTTGACTCTGCTTCCAGCTCAGAAGTTTTGCATTTCTTGAAGA
AGTCCGTAACGGAGCTTGGTCAAACTGTGATTATGGTTACTCACGACGCTGTTGCAGCCTCTTACGCGGATCGAGCAATC
GTGTTTGCAGATGGCCAAATCGTTGAAGATGTGCAAAATCCTACTGCGGAAGGCATGAGCAAGATGCTTATGGAACGCAG
CGAGGCTGGTATTAGTAATCAGTCTGCTCAATTGCAATAA

Protein sequence : 
MNSPYETSSYEQENALDFRADFNQNLIGETAVAALHVVKDFGKGAGIVHALRDVSVSFERGKFTAIMGPSGSGKSTLMHS
LAGLDSVNSGKVLVDGLDITGMSDKQLTLMRREMVGFIFQSFNLLPMFSAEQNILMPLTLAGKKPDKQWFNTLVLTLGLQ
NRLHHRPAELSGGQRQRVAIARALISKPSVVFADEPTGNLDSASSSEVLHFLKKSVTELGQTVIMVTHDAVAASYADRAI
VFADGQIVEDVQNPTAEGMSKMLMERSEAGISNQSAQLQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-36 44
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-38 42
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 3e-38 42
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-38 42
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 2e-29 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HMPREF0424_0641 YP_003373871.1 ABC transporter ATP-binding protein CP001581.1.gene798.p Protein 2e-46 50
HMPREF0424_0641 YP_003373871.1 ABC transporter ATP-binding protein CP001581.1.gene598.p Protein 2e-48 47
HMPREF0424_0641 YP_003373871.1 ABC transporter ATP-binding protein NC_008702.1.4606598. Protein 1e-37 46
HMPREF0424_0641 YP_003373871.1 ABC transporter ATP-binding protein NC_012469.1.7686878. Protein 9e-42 43