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Name : HMPREF0424_0633 (HMPREF0424_0633) Accession : YP_003373864.1 Strain : Gardnerella vaginalis 409-05 Genome accession: NC_013721 Putative virulence/resistance : Virulence Product : PTS system sugar-specific transporter subunit IIC Function : - COG functional category : S : Function unknown COG ID : COG3037 EC number : - Position : 704689 - 706077 bp Length : 1389 bp Strand : + Note : identified by match to protein family HMM PF04215 DNA sequence : GTGGACGGAATTCTGTCAGTACTGCTCGATATTTTCAGACAGCCATCTGTTATAGTTGCGCTTATTTCTTTTATTGGGCT TGCAGTGCAAAGAAAGAAATTCTCGGATATTTTGCAAGGATCAATCCGTACTCTTGTTGGTTTTCTTGTTTTAGCAGCTG GTTCTGGAGTTATTACTGAAGCGTTGAACCCCTTTGGCAAAATGTTTCAATACGCATTTCATGTGCAAGGCGTAGTGCCG AATAATGAAGCAATTATTGGAACTGTTTTATTGAAGTATGGCTCTGAATCTGCGCTTATTTTCTTCTTTGGAATGATTGT TAATATTATTCTTTCTATTACTTCTCGTTTTAAATTTATCTATTTAACGGGTCACGTAGCTTTCTATATGGCAAGTATGC TTGCAGTTATATTTAATGTTGCAGGATTTAGCATGTGGGAAGTTCTTTTATGGGGTTCAATTGCTCAAGGATTGTTTACG ACAATTTCTCCAGCACTGGTGCAGCCGTTTATGAAGAAAGCTTCAGGCAAAGATGATGTTGCTTTAGGACATCCTGCTGG TACTGGTGTTGCTTTAGGTGCGTTAATTGCAAAGCTTACTGCTTCAAAAAAGCGTCCTTCTAAGTCAACTGAGGATATTA AATTCCCAGCAGCATTGGGATTCTTGCGTGATACAACAGTTCTTATCACGCTTTCTATGGCTGTTATTTATATAGTAGTG GCACTTTTTGCTGGATCTTCGTATGTCGAAACACATTTATCTAATAGTCAAAACTTCATTGTTTTCGTTATGTTGAAGGC TGCAACTTTTGCTGCAGGTGTTTATATTATTCTTGCAGGCGTGCAGATTGTTCTTGACGAAATTGTTCCAGCTTTTAAGG GAATATCGGAAAAGCTTGTTAAAAATGCGCGTCCTGCTTTAGATGCACCAATGACTTTTGGCTTTGCTCCTAATGCTGTT CTTATTGGTTTCTTAGCTAGTTTCTTTGGCGGTTTGCTTGGAATGACGCTTATGGCGATTTTGGGAACGACAATTATTAT TCCTGGAATTGTTGCGCATTTCATGGCTGGTGGTGCTGCAGGAGTATTCGGTAATGGTCAAGGTGGAATACGTGGTTGCT TGACTGCATCATTTATTAATGGTCTTTTTATTACTTTCCTTCCGTTGTTCCTTTTGCCAGTGCTTGGCGATTTGGGAAGC GCAAATTCTACATATTCTGATGCGGATTATGGTGTATTTGGTGTAATACTTGGTCACGCAAATATTGTCGGTGGTCGTAC TGTTTTAATTTCTGTAATACTTATTGCACTAATATTGTTCTATTCTGTTTCGATATTGATGAATAAACGCGATTCTAATA ATTTTGAAAAGGTTGAAGAAATAAAATAA Protein sequence : MDGILSVLLDIFRQPSVIVALISFIGLAVQRKKFSDILQGSIRTLVGFLVLAAGSGVITEALNPFGKMFQYAFHVQGVVP NNEAIIGTVLLKYGSESALIFFFGMIVNIILSITSRFKFIYLTGHVAFYMASMLAVIFNVAGFSMWEVLLWGSIAQGLFT TISPALVQPFMKKASGKDDVALGHPAGTGVALGALIAKLTASKKRPSKSTEDIKFPAALGFLRDTTVLITLSMAVIYIVV ALFAGSSYVETHLSNSQNFIVFVMLKAATFAAGVYIILAGVQIVLDEIVPAFKGISEKLVKNARPALDAPMTFGFAPNAV LIGFLASFFGGLLGMTLMAILGTTIIIPGIVAHFMAGGAAGVFGNGQGGIRGCLTASFINGLFITFLPLFLLPVLGDLGS ANSTYSDADYGVFGVILGHANIVGGRTVLISVILIALILFYSVSILMNKRDSNNFEKVEEIK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| ORF8 | AAK27335.1 | unknown | Not tested | PAI-I AL862 | Protein | 3e-65 | 49 |
| unnamed | CAC39291.1 | hypothetical protein | Not tested | LPA | Protein | 2e-65 | 49 |
| vpeC | ADD91725.1 | putative PTS system-specific IIC component VpeC | Virulence | PAI-I AL862 | Protein | 2e-65 | 49 |
