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Name : HMPREF0424_0488 (HMPREF0424_0488) Accession : YP_003373729.1 Strain : Gardnerella vaginalis 409-05 Genome accession: NC_013721 Putative virulence/resistance : Unknown Product : oligopeptide ABC transporter, permease protein OppC Function : - COG functional category : E : Amino acid transport and metabolism COG ID : COG1173 EC number : - Position : 533048 - 534040 bp Length : 993 bp Strand : + Note : identified by match to protein family HMM PF00528 DNA sequence : ATGGAAGATAATTTGATGAAAAATGATTTGATTGCAAATAATGCTTCAAATTGCAATATATTACCGGGGCAAGAACGCTA CGTTGCACCATTAGACGATACGCCTATTCAAGAAGTGGATTCCGTAGACGAATCCGCTGCTGCAACGAGTATGTGGGCAG ATACTTGGAGAACTTTGCGCAGGAATCCATTGTTTATTGTTTCTGCAATTTTGATTATTGCAATTATTTTTGTTGCATTC TTCCCAAGCATTCTTACAAAGCACAATCCTAATTATTGCGTTTTGGAACACTCTCTTGAGCCAGCTTCAGCCGCGCATCC ATTTGGTTTTGATATGCAAGGTTGCGATATTTATGCTCGAGTTGTTTATGGTACTCGTACATCGCTAAGTGTTGGTTTGC TTGCAACTATTTTGGTTGTACTTGTTGGTTCTTTAATTGGTGCGTTAGCAGGATTCTTCGGAGGCTGGGTTGATACTATT CTCAGCCGAATAACTGATATCTTCTTGGCTTTACCAATGCTTCTTGGTGCAATCGTAGTTTTACAAATGTTCCGTACATC TAAATCAATTTGGAAAATTGTGCTTGTTATGGTGCTTTTTGGATGGGTTAGCGTTGCTCGTATTGCACGAAGCGCTGTTA TGGAATCAAAAAATCTTGAATTCAATACCGCATCTACTGCTTTAGGATCTACTCCAATACGTAATCTTTTCAAACACATT ATCCCGAACTCTTTGGCTCCAATAATTGTTGTTGGAACAACTTCGCTTGGAACTTATATTGTGTTGGAAGCAACATTAAG CTTCCTTGGAATTGGTTTACCAAGTACTACTGTCAGCTGGGGTGGAGATATTTCTACCGCTAGAAATGTTCTTACTACGA ACCCAGAAGTCTTGTTCTATCCGTCTATTGCGCTCGCAATTACTGTGCTCGCCTTTATTATGATGGGTGATGCTGTAAAG GATGCATTAGATCCGAAGAGCCGTAAGGCGTGA Protein sequence : MEDNLMKNDLIANNASNCNILPGQERYVAPLDDTPIQEVDSVDESAAATSMWADTWRTLRRNPLFIVSAILIIAIIFVAF FPSILTKHNPNYCVLEHSLEPASAAHPFGFDMQGCDIYARVVYGTRTSLSVGLLATILVVLVGSLIGALAGFFGGWVDTI LSRITDIFLALPMLLGAIVVLQMFRTSKSIWKIVLVMVLFGWVSVARIARSAVMESKNLEFNTASTALGSTPIRNLFKHI IPNSLAPIIVVGTTSLGTYIVLEATLSFLGIGLPSTTVSWGGDISTARNVLTTNPEVLFYPSIALAITVLAFIMMGDAVK DALDPKSRKA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| dppC | YP_005160016.1 | putative peptide transport system membrane protein | Not tested | Not named | Protein | 2e-81 | 58 |
