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Name : HMPREF0424_0487 (HMPREF0424_0487) Accession : YP_003373728.1 Strain : Gardnerella vaginalis 409-05 Genome accession: NC_013721 Putative virulence/resistance : Unknown Product : dipeptide ABC transporter, permease protein DppB Function : - COG functional category : E : Amino acid transport and metabolism COG ID : COG0601 EC number : - Position : 532109 - 533035 bp Length : 927 bp Strand : + Note : identified by match to protein family HMM PF00528 DNA sequence : ATGGGTAAGTACATTCTGCGTCGTATTTTGCAGATGATTCCTGTTGTTCTCGGCACAACATTATTAGTTTATGCTTTAGT ATTTGCTTTGCCTGGAGATCCAGTAAAAGCAATGTTTGGAGAAAAACCTGTTAATCCTGCAGTGGCTGCACAAATACGAG CCGAGTATAACTTAGATAAACCATTTATTATTCAATATTTACTTTTCTTAAAGAATGCTCTTACCCTCGATTTTGGTCAT ACTTTTGCAGGTCAACCAGTTATCGATGAAATTGGTCGTGCATTCCCAGTTACTGTTCAACTAGCAATTATGGCATTCGC TTTCGAAGCAATATTTGGTGTCATATTTGGCATAATTTCAGGTTTGAAGAAAGGCAAGTGGTATGACAGTGTGATCCTGG TTGTATCACTTCTTCTTATTTCTGTTCCAACATTTGTGACAGGTTTCGTAGGACAATACTTATTTGGTGTTAAATGGCGT ATATTACCAGTTACAGCTAGTAACGATCCTGGATTCTTCGATTTGCTTCTTCCTGCAATGGTTCTTGGTTCTGTGTCTAT GGCGTATATCATTCGACTTACAAGATCTGAAATTTCTTCAAATATTTCGCTTGATTATGTGCGTACAGCTCGTGCAAAGG GCTTAAAAGAAGGCTCTGTTATTGTTCGCCACGTTTTGCGCAACTCGCTTATACCTGTCGTCACCTTCTTAGGCCAGGAT TTGGGTGCTCTTATGGGCGGTGCAATGATTTCGGAAACAATCTTCAACATTCATGGCGTTGGATTCCTCACATATCAAGG GATTCTAAAAGGAGAAGGAAACCTTGTTGTTTCCATTGTCACGCTTTTGACATTGATATTTGTATTTAGCAATTTTCTTG TTGATATGTTGTACGCGGCTCTTGATCCGCGCATTCGTTACGCGTGA Protein sequence : MGKYILRRILQMIPVVLGTTLLVYALVFALPGDPVKAMFGEKPVNPAVAAQIRAEYNLDKPFIIQYLLFLKNALTLDFGH TFAGQPVIDEIGRAFPVTVQLAIMAFAFEAIFGVIFGIISGLKKGKWYDSVILVVSLLLISVPTFVTGFVGQYLFGVKWR ILPVTASNDPGFFDLLLPAMVLGSVSMAYIIRLTRSEISSNISLDYVRTARAKGLKEGSVIVRHVLRNSLIPVVTFLGQD LGALMGGAMISETIFNIHGVGFLTYQGILKGEGNLVVSIVTLLTLIFVFSNFLVDMLYAALDPRIRYA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| CDBH8_0923 | YP_005160015.1 | putative peptide transport system membrane protein | Not tested | Not named | Protein | 5e-80 | 59 |
