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Name : HMPREF0424_0486 (HMPREF0424_0486) Accession : YP_003373727.1 Strain : Gardnerella vaginalis 409-05 Genome accession: NC_013721 Putative virulence/resistance : Unknown Product : extracellular solute-binding protein Function : - COG functional category : E : Amino acid transport and metabolism COG ID : COG4166 EC number : - Position : 530279 - 531907 bp Length : 1629 bp Strand : + Note : identified by match to protein family HMM PF00496 DNA sequence : ATGAAGAATAAGGCTTTGGCTTTCGTTGCTGCTGCCTGCTCGCTGGCAATGTTACTTGGTGGCTGTGGCTCTTCCGCTAA GAATGCACAAACAAACGGTGGCAAGGTTATTATTACCGTTTCAAACTCTGAGCCACAAAACGAATTAGTCCCTGGAAATA TTAACGAAAATGCTGGCGCTCGTCCTGCCATGTTGGTTAATTCCACGTTGGTAACTTTCGATGAAAAAGGTAATCCTGTG AATGAGGATGCTGAAAGCATCACTCCAAATGCTGATGCTACCCAGTACACCGTGAAGGTTAAGAAAGGAAAGAAGTTCAG CGATGGCACTCCTATTACAGCCGAAAGCTTTGTGAAAGCTTGGAGCTTCGTCGCTAACGCTAAGAATGCTCAGAAGTGTG CTTCCTTCTTCCAAACCATTAAGGGTTATGCTGATTTGCAGAAGGATGGTACTAAGGGTGACGAACAGCTTTCTGGTTTG AAGGTTGTTGATGAAAATACTTTTACCGTTGATTTGGAACAGCCAGATTCTGTATTCCCAATTAAGGTTGGCTACTTGGC ATTTGCTCCACTTCCGGAATCCTTCTACAAGGATCCAAAGGCTTATGGCGAAAAGCCTGTTTCTTCTGGTCCATACTTGT TCAAGTCTTGGGATCACAACAAGCAGATTGAAGTTGTGAAGAACCCAGATTACGATGGTCCACGTAAGGCTCAGAATGAT GGCGTAACTTTCAAGGTTTATACAGATGGTAACGCTGCATACCGCGATGTGCAGGCTGGAAACCTCGATATGACTGATAA TATTCCAGATACCCAAACTAAGACTTTCCAGAAAGATACAACTGTTAAGGCTTACAACCGTCCAGGTTCTGTAATCCAAC AGTTCACTATTCCTTCAAGTCTCCCACACTTCGATGTAAAGACTGAAGAAGGTAAGCTTCGTCGTCAAGCTATTTCTATG GCTATAGACCGTAAGGTGATTATCAACAAGATTCTCAATGGCACTGCTTCTCCTGCGAACGAATTTACTTCTCCATTGAC TCCAGGCTATAAGGCTGATCTTAAGGGTCATGAGAACGTAGAATTTAATGCGAAGAAAGCTAAGGAACTTTGGGCTAAGG CAGATAAGATTTCTAAGTATGATGGATCTCTTACTTTCTCCTACAATGCCGATGGAAATGCAAAGTCTGTGTTTGATGCT GTTGTGAATTCCCTCAAGAATAATCTCGGAATCAAGGCTGAGACCACTCCAATTCCTACATTCCAGGAATTCCGTAATGC TTGCGCTAAGCGTCAGATTAAGGGTGCATGGCGTGCAGGTTGGATACCAGATTATCCAAGTGCAGAAAATTACTTGACTC AGGAATTTGCTTCCGTTGCAGCTGATGGCAATGGTTCCAACGAAGGTGATTATAAGAATCCAAAGTTCGACGATTTACTT AAGAAAGCTGCATCTGCTAAGCCAGGAGAGGCTATTAAGCTCTATCAGCAAGCAAACGAAATCCTTCTTGAGGATCTTCC ATCTGTCCCATTGTTCTACTCGAACGCTAAGGCTGTGATGGTTCCAACTTTGAAGGGCTTCACAATGGATTGGCAGAATA TGCCGCTGTACTATCAGCTTCACAAATAA Protein sequence : MKNKALAFVAAACSLAMLLGGCGSSAKNAQTNGGKVIITVSNSEPQNELVPGNINENAGARPAMLVNSTLVTFDEKGNPV NEDAESITPNADATQYTVKVKKGKKFSDGTPITAESFVKAWSFVANAKNAQKCASFFQTIKGYADLQKDGTKGDEQLSGL KVVDENTFTVDLEQPDSVFPIKVGYLAFAPLPESFYKDPKAYGEKPVSSGPYLFKSWDHNKQIEVVKNPDYDGPRKAQND GVTFKVYTDGNAAYRDVQAGNLDMTDNIPDTQTKTFQKDTTVKAYNRPGSVIQQFTIPSSLPHFDVKTEEGKLRRQAISM AIDRKVIINKILNGTASPANEFTSPLTPGYKADLKGHENVEFNAKKAKELWAKADKISKYDGSLTFSYNADGNAKSVFDA VVNSLKNNLGIKAETTPIPTFQEFRNACAKRQIKGAWRAGWIPDYPSAENYLTQEFASVAADGNGSNEGDYKNPKFDDLL KKAASAKPGEAIKLYQQANEILLEDLPSVPLFYSNAKAVMVPTLKGFTMDWQNMPLYYQLHK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| CDBH8_0922 | YP_005160014.1 | putative peptide transport system secreted protein | Not tested | Not named | Protein | 3e-104 | 47 |
