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Name : lysS (HMPREF0424_0393) Accession : YP_003373642.1 Strain : Gardnerella vaginalis 409-05 Genome accession: NC_013721 Putative virulence/resistance : Unknown Product : lysine--tRNA ligase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : 6.1.1.6 Position : 422568 - 424265 bp Length : 1698 bp Strand : + Note : identified by match to protein family HMM PF00152; match to protein family HMM PF01336; match to protein family HMM TIGR00499 DNA sequence : ATGACTGACACCAATACTGCAATGTCTGCCGCGCAAAGTGCCGCAGAATCTGCCGCTAAAAATGCAGCAGAAAACGAAGC AACAGATACCGTCAATGAAATTGACACTGTTGAACATGCCGAAATGTTACTCGCTCAAGACGAGGCAATCGCCAAGCGCG TAAACGAAGGCGCAACCTTGGATGAAGCAATCGACCCAAGCAATAAAGAATTTGGGCCACAAGCTCATCCTGAGCAGGTA CAGATGCGCGTTGCTAAGCGTGCAATGATGCTTAAGGAGGGTGTGCAGCCTTATCCTGTGCATCTTAACGTTACTGACAC AATCGAAAAGGTGCGTGCTGATTTCGATGGCAAGCTTGAAGCTGGCGAAGAAACCGATACCGAGGTTGGTATTGCAGGTC GCGTGCTTTTCTTGCGTAACGCTGGCGGCTTGTGCTTTGTTAAGCTTTCTGCCGGTGACGGTACTACGATTCAGGCGATG GTTTCCAAGAAGGAAATTGGTGAGGAGTCCATTAAAAGTTTTAAGCAGATGGTGGATTTGGGTGACCACTTGTACGTTCG TGGTCGCGTGATTTCTTCTAAGACTGGCGAGCTTTCTGTATTTGCAACCGAGTGGGCGATTGCGGCTAAGGCTTTGCAGC CGCTTCCGGCTTTGCATAAGGAATTAAGCGACGACACTCGTACGCGCAAGCCTTATATTGGCATGATTGCGGACGAGAAG ATTCGCGATATGGTTCGCAGGCGTTCGCGCGCTGTGGCTTCTCTTCGCCGTACTTTCGACAGTCATGACTTCTTGGAAGT CGAAACTCCAATGTTGCAAACGGTTCACGGCGGTGCTGCTGCTCGTCCATTCACAACTCACATGAACGCTTTCGACATTG ATCTTTATTTGCGCATTGCTCCGGAGCTTTTCTTGAAGCGCTGCTTGGTTGGTGGCATTGAGCGCGTGTTTGAAATCAAC CGCGATTTTAGAAACGAAGGCGTGGACGCAACTCACGCTCCAGAGTTTACGATGCTTGAGGCTTACCAGGCTTACGGCAC TTACGATACGATTGCTGCTCTTACTAAAGAGCTGATTCAGAAGGCTGCACTAGACGCATTCGGATCTACTAAGGTGACTT TGCTCAACGGCGAAGAATACGATTTTGGTGGCGAATGGAAGCAGATTACCATGTACGGCTCGCTTTCTGAGGCTTTGGGC GAGGAGATTACTCCGGAAACTTCTGTTGAGCATTTGGGTGCGATTGCAGACAAGCTTGGCGTTGAGCGCGATGACGTGGA AAATCACGGCAAGTTGGTTGAGCACTTGTGGGAGCACTTCTACGAGGATAAGCTTTACGAGCCAACGTTTGTGCGCGACT TCCCAGTGGAGACCAGCCCTCTTGTTAAGGGTCACCGCACAAAGCCAGGAATGGTTGAAAAGTGGGATTTGTATGTGCGT GGATTTGAGCTTGCAACCGGCTACTCCGAGCTTAACGATCCTGTTGTGCAGCGCGAGCGTTTTGTTGCTCAAGCTAAGGA TGCTTTGGCTGGAGACGTTGAGGCAATGGATATTGACGAGGACTTCATTGAGGCTCTCGGCGTCGGTATGCCTCCTGCTG GCGGCATGGGAATGGGTATTGATCGCTTGCTGATCGCTCTTACGGGCGCAACTATTCGCGAGACGATTACCTTCCCACTC GTGAAGCCTCTTCGCTAG Protein sequence : MTDTNTAMSAAQSAAESAAKNAAENEATDTVNEIDTVEHAEMLLAQDEAIAKRVNEGATLDEAIDPSNKEFGPQAHPEQV QMRVAKRAMMLKEGVQPYPVHLNVTDTIEKVRADFDGKLEAGEETDTEVGIAGRVLFLRNAGGLCFVKLSAGDGTTIQAM VSKKEIGEESIKSFKQMVDLGDHLYVRGRVISSKTGELSVFATEWAIAAKALQPLPALHKELSDDTRTRKPYIGMIADEK IRDMVRRRSRAVASLRRTFDSHDFLEVETPMLQTVHGGAAARPFTTHMNAFDIDLYLRIAPELFLKRCLVGGIERVFEIN RDFRNEGVDATHAPEFTMLEAYQAYGTYDTIAALTKELIQKAALDAFGSTKVTLLNGEEYDFGGEWKQITMYGSLSEALG EEITPETSVEHLGAIADKLGVERDDVENHGKLVEHLWEHFYEDKLYEPTFVRDFPVETSPLVKGHRTKPGMVEKWDLYVR GFELATGYSELNDPVVQRERFVAQAKDALAGDVEAMDIDEDFIEALGVGMPPAGGMGMGIDRLLIALTGATIRETITFPL VKPLR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lysS | YP_005163386.1 | lysyl-tRNA synthetase | Not tested | Not named | Protein | 2e-134 | 57 |
