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Name : serS (HMPREF0424_0357) Accession : YP_003373608.1 Strain : Gardnerella vaginalis 409-05 Genome accession: NC_013721 Putative virulence/resistance : Unknown Product : serine--tRNA ligase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG0172 EC number : 6.1.1.11 Position : 385411 - 386697 bp Length : 1287 bp Strand : + Note : identified by match to protein family HMM PF00587; match to protein family HMM PF02403; match to protein family HMM TIGR00414 DNA sequence : ATGCTTGATATCCAATTTATTCGTGAACATGCCGACGTAGTTAAGGAATCGCAGCGCAAGCGCGGTGAATCCGTTGAGCT CGTCGATGAAGTATTGCGCAGCGATGATTTGCGCCGAACCGCTCTTAAGGCTTTTGAAGAAGCTCGCGCCGAGCAAAAAG CTATTGGTAAGAAGGTTGCAACAGCTAGCGCGGAGGAAAAGGCTGCGCTTATTGCCGAAACTAAAGAATTAGCTTCGAAA GTTGCGGAATACAAAGCTGAATCCGAAAAAGCTACTGCCGACTACACTACGGCAATGTGGAAGCTTTCTAACATCGTTGA AGATGAAGCTCCAGAAGGCGGAGAAGACGACTATGTTGTAGTTAAGAAGGTTGGTACGCCTCGCGATTTTGCAGCTGAAG GTTTTGAGCCAAAGGATCATTTGACTCTTGGAACTGGTGTTGCTGGAATTGATATGCGTCGTGGCGTGAAGGTTGCAGGC TCTCGCTTCTACTTCTTGCGCGGTGCTGTGGCTCGCTTGCAAATCGCAATGCTTACTATGGCTGTTGATCAAGCCGAAGA GCACGGTTTTACGCTTGCGATTACGCCAACGCTTGTTCGCCCAGAAGTAATGCGCGGAACTGGCTTCTTGAATTCTCATG CGGACGAGATTTACCGTTTGCGCGAACCAGATGATCAGTATTTGGTCGGTACTTCCGAGGTTGCTTTGGCTGGCATGCAT GAGGATGAGATTCTTGACTTAAGCAATGGTGCTTTGCGTTATTGCGGTTGGTCGAGCTGCTACCGTCGTGAAGCTGGTGC TGCTGGAAAGGATACTTCTGGTATTATTCGTGTGCATCAGTTCGATAAGGTTGAGATGTTCGTTTATTGCAAGCAGGAAG ATTCTCGCGCTGAGCATCAAAAGTTGCTCGGTATGGAGCAGGAAATGCTTGCTAAGGTGGAAGTGCCTTACCGCATTATT GATACTGCTGCAGGTGACCTTGGTTCTTCTGCCGCTCGTAAGTTTGATTGTGAAGCTTGGGTTCCAACGCAAGGACGTTA CCGTGAGCTTACTTCTACTTCTAACTGCACTGAGTATCAGGCTCGCCGATTGAATGTGCGCGAACGTATGGAAGATGGCG GAACTCGCTCAGTTAGTACGCTTAACGGCACTTTGGCTACTACTCGCTGGCTTGTGGCTATTTTGGAAAATCATCAGCAT GAAGATGGTTCGATTGATATTCCAAAGGCAATGCAGGCTTATATGGGTGGCAAGGAAGTCATTGAGCCAACTAAGTGGGA AGCGTGA Protein sequence : MLDIQFIREHADVVKESQRKRGESVELVDEVLRSDDLRRTALKAFEEARAEQKAIGKKVATASAEEKAALIAETKELASK VAEYKAESEKATADYTTAMWKLSNIVEDEAPEGGEDDYVVVKKVGTPRDFAAEGFEPKDHLTLGTGVAGIDMRRGVKVAG SRFYFLRGAVARLQIAMLTMAVDQAEEHGFTLAITPTLVRPEVMRGTGFLNSHADEIYRLREPDDQYLVGTSEVALAGMH EDEILDLSNGALRYCGWSSCYRREAGAAGKDTSGIIRVHQFDKVEMFVYCKQEDSRAEHQKLLGMEQEMLAKVEVPYRII DTAAGDLGSSAARKFDCEAWVPTQGRYRELTSTSNCTEYQARRLNVRERMEDGGTRSVSTLNGTLATTRWLVAILENHQH EDGSIDIPKAMQAYMGGKEVIEPTKWEA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| serS | YP_003446791.1 | seryl-tRNA synthetase | Not tested | The aminoglycoside resistance gene cluster | Protein | 3e-61 | 41 |
