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Name : rplS (HMPREF0424_0348) Accession : YP_003373599.1 Strain : Gardnerella vaginalis 409-05 Genome accession: NC_013721 Putative virulence/resistance : Unknown Product : 50S ribosomal protein L19 Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG0335 EC number : - Position : 375195 - 375560 bp Length : 366 bp Strand : + Note : identified by match to protein family HMM PF01245; match to protein family HMM TIGR01024 DNA sequence : ATGGTAAATGCTGTAGAAGCATTTGATGCTAAGCATCTTAAGGCTGCTGAAGAAATTCCAGCTTTCCGTCCTGGCGATAC CGTTGACGTCAACGTTAAGATTCAGGAAGGCAACAACACTCGTATTCAGACTTTCACCGGCGTTGTGATTGCTCGTAAGG GTGCTGGCGTGCGTGAAACTTTCGTTGTTCGTAAGGTGAGCTTCGGCACTGGTGTTGAGCGTCGTTTCCCACTTCATTCT CCAGCTATCGATTCGATTAAGCTGGTTCGTAGCGGTCGCGTTCGTCGCGCTAAGCTGTACTACTTGCGCGCTTTGCGTGG TAAGGCTGCTCGTATTGCTGAGCGTCGCGATAACTCTGCTAAGTAA Protein sequence : MVNAVEAFDAKHLKAAEEIPAFRPGDTVDVNVKIQEGNNTRIQTFTGVVIARKGAGVRETFVVRKVSFGTGVERRFPLHS PAIDSIKLVRSGRVRRAKLYYLRALRGKAARIAERRDNSAK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| rplS | CAA68924.1 | ribosomal protein L19 | Not tested | Internalin | Protein | 2e-18 | 56 |
| rplS | AAS66827.1 | 50S ribosomal subunit protein | Not tested | SSR-1 | Protein | 1e-17 | 53 |
