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Name : HMPREF0424_1332 (HMPREF0424_1332) Accession : YP_003374515.1 Strain : Gardnerella vaginalis 409-05 Genome accession: NC_013721 Putative virulence/resistance : Unknown Product : alpha amylase Function : - COG functional category : G : Carbohydrate transport and metabolism COG ID : COG0366 EC number : - Position : 1592662 - 1594581 bp Length : 1920 bp Strand : - Note : identified by match to protein family HMM PF00128 DNA sequence : ATGACTACTTTTGACAGAGCAAACTTGCCAGAATCCGTGCGCACAAACGGCGCTACTCCAAACCCTTGGTGGGCGAATGC AGTTGTGTATCAGATTTATCCACGAAGCTTCCAGGATACGAACGGTGACGGCATTGGTGATTTGAAGGGAATTACTTCGC GCCTTGATTATTTGGCTGATTTAGGCGTTGACGTGCTCTGGCTCAGCCCTGTTTACAAGTCCCCACAAGACGATAACGGC TACGATATTTCCGATTATCAAGATATTGATCCGCTTTTCGGAACTTTGGAAGATATGGACGAGCTGCTGGCTGGAGCTCA CGAGCGCGGTCTTAAAGTCGTGATGGATTTAGTAGTAAATCACACTTCTGACGAGCACGCTTGGTTCCAGGCTTCAAGAG ATGCTTTTAGTGATTACGCTGATTGGTATTGGTGGAGGCCTGCGCGTGAAGGTTGTGTGCCTGGTGAGCCGGGTGCGGAG CCGAATAAGTGGGGTTCGTATTTCGGCGGTTCCGCGTGGACTTACGATCCGAAGCGCGGAGAATACTTCCTTCACCAGTA TTCGCCAAAGCAGCCAGATTTGAATTGGGAAAATCCCGCGGTTCGCGCTGCCGTGTACAAGATGATGAATTGGTGGATGG ATCGCGGAATTGATGGCTTCCGCATGGATGTGATTACGCAAATTTCCAAGCATGTTGATTCTGAAGGTCGTTTGCCGGGT GAAGATGGCTGCCAAATTGAAGATTTGCCAGCTGGTGCTGACGGCTATTCTTCGCCATTCCCGTTCTGCTCGGACGGTCC TCGTTTAGACGAATTCTTGCGTGAGATGCGTGCAGAAGTTTTCGACGGTCGCGAAGGTTATCTTACTGTCGGCGAGGCTC CGGGAATTTCTCCGCACCGTAATACTTATATTACTGACCCTGCCCACAGCGAACTTGACATGTTATTCCTGTTCAATCAT GTGGATATCGATTGCGAAAACGGTACTAAGTGGAATCCTGTGCCGCTAAAGCTTACGGCATTAAAGAGCGTGATGGCAGA GCAGCAACAAGCGGTAGCGGATGCTGGTTGGGCGAGCCTGTTCTTTAATAATCACGATCAGCCGCGTGCGCTTTCTCGCT GGGGTAGTGAGGCTAGCGAGGAGATGCGCGTGCGCTCTGCTAAGGCGATTGCCATGCTTCTTCACATGCACCGCGGCACG CCTTACGTGTACCAAGGCGAGGAAATTGGTATGACTAACGCGCACTTTACGCGTCTCGAGCAGTATCGCGATTTGGAAGC GTTGAATATGTTTAAGCAGCGCGTAGAAGAAGCGCATATTCAGTCTGCTGAGTCGATGATGGATGCGCTCGCAAAGCGCG GCCGCGACAATTCTCGAACTCCAATGCAGTGGAATGCTTCTAAATACGCGGGATTCATGCCTTTTAATGTTCAGTCGGTA AATAACGCAGAGCCGTGGATTAGTGTGAATCCTAATTATGTGGATATTAACGCAGCGGAGCAGATGGAAGATTCAGATTC CGTTTACGCTTTCTATAAGTATTTGATTGCGCTTCGTCATTCGGAACCGATTGTTTCTGCTGGTTCTTGGGATTTGGTTG ATGCAGATGACGAGTGCGTGTATGCTTTCGTGCGCGAGCTTAAATCTGGTTGCGAAAAGCAGGAAGATTCTGCAGAGACT GCTGCGGAATCTGCTGCAAATTCCGCGGAATCTACAGAACGCATGCTCGTAATGGTTAATATGACTGACTCAACTGTGCC TATCCCTACGCAGAGCGCGCAATTATTGCAAAATTGCGCCTCTAACGCTTTTGTAGGGCGTGACGTAATGGTTACGACCT ACGACGTGAATCACGCGCTTACATCGCTTAAAAACGGTACGCTTGCGCCTTGGGAAGGTATAGCTGTTACTTTGCAATAG Protein sequence : MTTFDRANLPESVRTNGATPNPWWANAVVYQIYPRSFQDTNGDGIGDLKGITSRLDYLADLGVDVLWLSPVYKSPQDDNG YDISDYQDIDPLFGTLEDMDELLAGAHERGLKVVMDLVVNHTSDEHAWFQASRDAFSDYADWYWWRPAREGCVPGEPGAE PNKWGSYFGGSAWTYDPKRGEYFLHQYSPKQPDLNWENPAVRAAVYKMMNWWMDRGIDGFRMDVITQISKHVDSEGRLPG EDGCQIEDLPAGADGYSSPFPFCSDGPRLDEFLREMRAEVFDGREGYLTVGEAPGISPHRNTYITDPAHSELDMLFLFNH VDIDCENGTKWNPVPLKLTALKSVMAEQQQAVADAGWASLFFNNHDQPRALSRWGSEASEEMRVRSAKAIAMLLHMHRGT PYVYQGEEIGMTNAHFTRLEQYRDLEALNMFKQRVEEAHIQSAESMMDALAKRGRDNSRTPMQWNASKYAGFMPFNVQSV NNAEPWISVNPNYVDINAAEQMEDSDSVYAFYKYLIALRHSEPIVSAGSWDLVDADDECVYAFVRELKSGCEKQEDSAET AAESAANSAESTERMLVMVNMTDSTVPIPTQSAQLLQNCASNAFVGRDVMVTTYDVNHALTSLKNGTLAPWEGIAVTLQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| malL | YP_251987.1 | oligosaccharide alpha-1,6-glucosidase | Not tested | SCCmec | Protein | 3e-107 | 44 |
