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Name : HMPREF0424_1311 (HMPREF0424_1311) Accession : YP_003374499.1 Strain : Gardnerella vaginalis 409-05 Genome accession: NC_013721 Putative virulence/resistance : Unknown Product : aminotransferase AlaT Function : - COG functional category : E : Amino acid transport and metabolism COG ID : COG0436 EC number : 2.6.1.2 Position : 1566274 - 1567800 bp Length : 1527 bp Strand : + Note : identified by match to protein family HMM PF00155; match to protein family HMM PF01212; match to protein family HMM PF01381 DNA sequence : ATGGCACAGAATTTTGCTGATGAGCTTAAAAAAGCTATGAAGCGTAAGGGGTACAAGCAGATTGACGTAATCGAGCTTGC AGCAAAAAACGGTCATAAACTTGGTAAAAGCCAGTTAAGCCAGTATTTAAGCGGCAAAACCGAGCCTCGCAAAGACGTAC GTAACATGCTAGCTGAAATTCTTGGAATCAGCAGCGACGGAATCAAAGGCGGTCATTCTTGTGCAAAAATCGAGCAAAAC TGCCAGTCTGCAGAAGAACCACAATTAAATCAGCCACAGCTTACAGAAGCTGAACTTTCCCAAACACTCAAACATAGAAC CTTCAACAAATCAACCAAACTCGAGCACGTGCTTTATGACGTTCGCGGCCCAGTTGTTGAAGAAGCAAACCGCATGGAAG CGAACGGAACGCATATTCTAAAGCTCAACATTGGAAATCCTGCGCCTTTCGGATTCCGCGCTCCAGACGAAGTGATTTAC GACATGCAACAGCAGCTTATTGACTGCGAAGGCTACTCGGATAGTCGTGGACTTTTCTCCGCTCGCAAGGCGATTATGCA ATACGATCAGCTTAAGGGCATTCCAGGCGTGCAAATGGAAGATATTTACACTGGAAACGGAGTTTCCGAGCTGATTAATC TTTCTATGCAAGCGCTGCTTGATTGCGGCGACGAGATTCTTATCCCAAGCCCAGACTATCCGTTGTGGACTGCGTGCGCT AGCCTGGCTGGAGGTACTCCTGTGCACTACATGTGTGACGAAAAGTCGCATTGGTACCCAGATATTGCCGACATTCGCTC TAAAATCACGCCTCGCACTAAAGCAATCGTGATTATTAACCCGAATAATCCTACGGGTGTGCTGTATAGTCGCGAAGTTT TGGAAGAGATTGTTAAGATTGCGCGCGAGTTTAATTTGATTATTTTTGCGGACGAGATTTACGACCGTCTTGTTATGGAT GGCAAGAAGCATATTTCGATTGCTTCTCTTGCTCCAGACGTATTCTGCGTAACTTTCAGCGGACTTTCTAAGTCGCATAT GATTGCTGGCTTCCGTATTGGTTGGATGAGTCTTTCGGGAGATAAATCCAAGGCTCGCGACTACATTATGGGTCTTAATA TGCTGTCTAATATGCGCTTGTGCTCGAACGTTCCTGCGCAGTCAATTATTCAGACTGCTTTGGGCGGATACCAGAGCGTT GAAAAGTATTTGGAACCAGGCGGACGCGTGTATGAGCAGCGCGAGTATTGCTATAACGCGCTTCAAGAGATGGATGGCGT AAGCGTTGAGCGACCAGACGCTGCTTTCTACATGTTTGTAAAGCTCGATCCAAGTCGATACAACATTCACGACGACGAAC AGTTTGCGCTTGATTTGCTACGCGATCAGAAGTTGCTGATTGTGCACGGCAAAGGCTTTAATTGGCAGACTCCAGGCTAC TTCCGCGTAGTCTACTTGCCGCGCTTGCAAACGCTTCGTGACGCAATGGGCAAACTCGCTAACTTCCTCTCCTACTATCG CCAGTAG Protein sequence : MAQNFADELKKAMKRKGYKQIDVIELAAKNGHKLGKSQLSQYLSGKTEPRKDVRNMLAEILGISSDGIKGGHSCAKIEQN CQSAEEPQLNQPQLTEAELSQTLKHRTFNKSTKLEHVLYDVRGPVVEEANRMEANGTHILKLNIGNPAPFGFRAPDEVIY DMQQQLIDCEGYSDSRGLFSARKAIMQYDQLKGIPGVQMEDIYTGNGVSELINLSMQALLDCGDEILIPSPDYPLWTACA SLAGGTPVHYMCDEKSHWYPDIADIRSKITPRTKAIVIINPNNPTGVLYSREVLEEIVKIAREFNLIIFADEIYDRLVMD GKKHISIASLAPDVFCVTFSGLSKSHMIAGFRIGWMSLSGDKSKARDYIMGLNMLSNMRLCSNVPAQSIIQTALGGYQSV EKYLEPGGRVYEQREYCYNALQEMDGVSVERPDAAFYMFVKLDPSRYNIHDDEQFALDLLRDQKLLIVHGKGFNWQTPGY FRVVYLPRLQTLRDAMGKLANFLSYYRQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| aspC | YP_005684271.1 | Aminotransferase AlaT | Not tested | PiCp 7 | Protein | 3e-113 | 57 |
| aspC | YP_003784329.1 | aspartate aminotransferase | Not tested | PiCp 7 | Protein | 3e-113 | 57 |
| aspC | YP_005686363.1 | Aminotransferase AlaT | Not tested | PiCp 7 | Protein | 3e-113 | 57 |
| aspC | YP_005682179.1 | Aminotransferase AlaT | Not tested | PiCp 7 | Protein | 3e-113 | 57 |
