|
Name : HMPREF0424_1264 (HMPREF0424_1264) Accession : YP_003374454.1 Strain : Gardnerella vaginalis 409-05 Genome accession: NC_013721 Putative virulence/resistance : Virulence Product : PTS system transporter subunit IIBC family protein Function : - COG functional category : S : Function unknown COG ID : COG3037 EC number : - Position : 1511626 - 1513158 bp Length : 1533 bp Strand : - Note : identified by match to protein family HMM PF04215 DNA sequence : ATGAACATTGTAGTTCAGGTTTTAAATTTCATAAGTCAGCAGATTTTGAATGTGCCGGCTTATTTGATTGGTATTATTGC AGCAATCGGTCTTATCGCACTCAAGCGTAGTGCAGGACAGGTGATTGCAGGTGGCTTAAAAGCTGCTATGGGTTACCTCA TTTTGGGTGCAGGTGCTGGCGTTGTTGTTGGCGCTCTTGCTCCATTTGGTGACTTGGTTTTGAAGTCTACTGGTGCTCAT GGTGTTGTACCTACAAATGAGGTTATTACTGCTCAGGCTGCAGGTCAGTACGGTGCTACTTCTGCGTACATTATTGTGCT CAGCTTCGTTCTTATGCTTCTTGCTGCACGCTTTACTCCTCTGAAGTACATATTCTTGACTGGTCACCACATGGTGTTCA TGTCTATGCTTTTGGCTCTAGTTCTTTCCGTTGGTTTTGGCGCAAGCAACCAGTTGCTTATTGTTATTGTCGGCTCTGTC ATTATGGCAACGGTTATGGTTGTTCTGCCAGCTTTTGCGCAGCCTTTTATGAACCGTATTACTGGTAGCGATAAGCTCTC GATTGGTCACTTTAACTCCTTAAGTTACATTGTTTCTGGTGCTGTTGGTGCTGCTGTTGGTAAGAAGTCTAAGTCTACTG AAGATATCAACTTCCCTAAGGGATTGAGCTTCTTGCGTGATTCAATGGTCTCCACGACTTTGTTGATGGTTGTGCTGTAT TTGGTATTCGCAGTGTGGGCTTCGGTTGTGTTGCCAGTAAAGGAACTCTTCAAGATTTTCGCGTCTCATCCTACGGACTA TAGTGCCTTCTACATGGCGGCTTTTGCTCAGGCTTTGCAATTTGGAATTGGTGTTAGTGTCATCCTCTACGGCGTTCGTA TTATTTTAGGTGAATTGGTTCCTGCATTCCAGGGTATTGCTAACAAGGTCGTTCCAGGCGCTCGTCCAGCATTGGATATT CCAATCGTATTCCCATACGGTGCTAATGCTTCTCTTATTGGCTTCTTGTCTTCCTTCGTTGGAGGTCTTGTAGCTCTCGG ACTTATTGCAATTTGGATGGGTCCAGCTTGGGGATTGGCATTAATTCTCCCAGGAATGGTGCCTCACTTCTTCGATGGTG GTGGTGCAGGCGTGTTTGGTAATGCAACCGGTGGTCGTCGTGGTGCTATTCTCGGTGGTTTTATTAACGGTTTAATTATT ACATTCCTTCCAGCAGTATTGCTTACTGTTATGGGTTCCTTCGGCTTGGCAAACTCCACCTTCGGCGATGCTGACTTTGG TTGGATTGGTACTGTTGTGGGTAACTTCGCTCACCTCGGTGCTGGCGTTGGTGCTATAAGCTTGATTATTGTTGCTGTTA TTCTGTTCGCCTTGGCTTGGGTATGGCAGGTTAAGGTTGTTAACACTGGCTGGCTTCCTGCAGTAAAGCATGCTGAGTTC ATTGAAGAAATTAAGAAGCAAGAGCGTGCTGCTAAGAAAGCAGCTATGGCAGCTAAGGCTGCTGAAACTCATGAGGAGGC TGTTACAAAATAA Protein sequence : MNIVVQVLNFISQQILNVPAYLIGIIAAIGLIALKRSAGQVIAGGLKAAMGYLILGAGAGVVVGALAPFGDLVLKSTGAH GVVPTNEVITAQAAGQYGATSAYIIVLSFVLMLLAARFTPLKYIFLTGHHMVFMSMLLALVLSVGFGASNQLLIVIVGSV IMATVMVVLPAFAQPFMNRITGSDKLSIGHFNSLSYIVSGAVGAAVGKKSKSTEDINFPKGLSFLRDSMVSTTLLMVVLY LVFAVWASVVLPVKELFKIFASHPTDYSAFYMAAFAQALQFGIGVSVILYGVRIILGELVPAFQGIANKVVPGARPALDI PIVFPYGANASLIGFLSSFVGGLVALGLIAIWMGPAWGLALILPGMVPHFFDGGGAGVFGNATGGRRGAILGGFINGLII TFLPAVLLTVMGSFGLANSTFGDADFGWIGTVVGNFAHLGAGVGAISLIIVAVILFALAWVWQVKVVNTGWLPAVKHAEF IEEIKKQERAAKKAAMAAKAAETHEEAVTK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| ORF8 | AAK27335.1 | unknown | Not tested | PAI-I AL862 | Protein | 4e-69 | 48 |
| unnamed | CAC39291.1 | hypothetical protein | Not tested | LPA | Protein | 4e-69 | 48 |
| vpeC | ADD91725.1 | putative PTS system-specific IIC component VpeC | Virulence | PAI-I AL862 | Protein | 4e-69 | 48 |
