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Name : HMPREF0424_1214 (HMPREF0424_1214) Accession : YP_003374408.1 Strain : Gardnerella vaginalis 409-05 Genome accession: NC_013721 Putative virulence/resistance : Unknown Product : sortase family protein Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG3764 EC number : - Position : 1441623 - 1442642 bp Length : 1020 bp Strand : - Note : identified by match to protein family HMM PF04203; match to protein family HMM TIGR01076 DNA sequence : ATGAAATTAAACGACGCTGTTGTTAAAGTATATGCTTTCTTCAAGCAACTCAAAGCAAAACCCGTCGCTTCTGCAACCGA AACAACACCAGCCTCCACAGCAACGCAAACCGCAGCCTCCGCAACTGCAACAAAACCCGCTAAAAAACCCAAATCCAAAC TCCGCCGTATTTTAGAGCCAATCGTTCTCGCGCTTGCAGCGATTCTGTGCTTCACGTACCCGATTGCGTCAACGTTGTGG AATAACAAGGTGTCGAAGGAGATTTCTGTAGCTTATGATCGGCTGAGTCGTAAGCAGACTGCGAGCGCTAGAGAGAAGAT TTTGAACGCGGCTCGTCGTTATAATGCGCGCCACAAGTCGATTATTACGGCTGATCCGTACAATGGCACGACGGATTATA TGAAGACGCCGGAGTATAAGGAGTATGCGAAGCAGCTGGATGAGCCGATGGGGATTATGGGTATTGTGAAAATCCCGAAG ATTGGCGTTAAGCTGCCGATTTACCACGGTAGTTCGCAGGAGGTTTTGGCGTATGGCGCTGGACACTTGTATGGCACAGA TTTGCCGGTTGGGGGTAAAACGCGTCACGCTGTTGTGACGGCGCATACGGGTTTGCCAAATGCGACCATGTTTGATGATT TAGTGGAGTTGAAGAAGGGTGATTTCTTCTACTTTGACGTGCAGGGGGAGACGCTGCGTTACAGGGTATTCCGCATTAGC GTGGTCGATCCGCATGATATTAGGTTACTTCAACGCGAGAATGGGCGTGATCTGGCGACGCTGCTTACCTGTACGCCGTA TGGTGTTAATACGCAGAGATTGCTGGTGACAGGCTATCGCGTGCTGCCGGATCCTGTTTCCGTGCCGGGCGATAAGTTGC AGTGGCCGCTTTGGATGACGATGTTTGTGCTCGCGCTTATTGGTTGCGCTGTGATTCTTACGACGATGATTATTGCCGCG GTTCGCAAGCGCCACCGCCGTGCTGCTTCACTTGCTCATGCCAAACATATAACTGCTTAG Protein sequence : MKLNDAVVKVYAFFKQLKAKPVASATETTPASTATQTAASATATKPAKKPKSKLRRILEPIVLALAAILCFTYPIASTLW NNKVSKEISVAYDRLSRKQTASAREKILNAARRYNARHKSIITADPYNGTTDYMKTPEYKEYAKQLDEPMGIMGIVKIPK IGVKLPIYHGSSQEVLAYGAGHLYGTDLPVGGKTRHAVVTAHTGLPNATMFDDLVELKKGDFFYFDVQGETLRYRVFRIS VVDPHDIRLLQRENGRDLATLLTCTPYGVNTQRLLVTGYRVLPDPVSVPGDKLQWPLWMTMFVLALIGCAVILTTMIIAA VRKRHRRAASLAHAKHITA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| srtC1 | YP_005141811.1 | putative fimbrial associated sortase-like protein | Not tested | Not named | Protein | 3e-40 | 42 |
| DIP0236 | NP_938627.1 | fimbrial associated sortase-like protein | Not tested | Not named | Protein | 1e-42 | 41 |
