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Name : smpB (HMPREF0424_1069) Accession : YP_003374272.1 Strain : Gardnerella vaginalis 409-05 Genome accession: NC_013721 Putative virulence/resistance : Unknown Product : SsrA-binding protein Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0691 EC number : - Position : 1220879 - 1221376 bp Length : 498 bp Strand : - Note : identified by match to protein family HMM PF01668; match to protein family HMM TIGR00086 DNA sequence : ATGGCAAATAAGCCTGCGCAAGATGGCACTGTTACTGTGGCACAAAACCGTAAAGCGCATCATGATTATGTAATTGAAGA TTGTTATGAAGCAGGTCTTGCTCTTACTGGTACTGAAGTTAAGTCACTTCGCGAAGGGCGTGCTTCTTTAGCTGAATCAT TTGTGAATATTGATCGTCGTGGTGAAATGTGGCTTGAAGGAGCAAATATTCCTGAATATTTAAACGGCACATGGAATAAT CATGCTCCTAAGCGCAAGCGTAAGCTTCTGCTTCACGCTGCTGAGATTGCTAAGCTTTCTAGGCAAACTGAGGCGAAAGG CTACACTGTTGTGCCTTTGCGTTTGTATTTTAAGGGAAGCTACGTAAAAGTAGAAATTGCTTTAGCGCGCGGTAAAAAGG AATTTGATAAGCGTCAGGCTTTGCGTGAGGAGCAAGATAAGCGAGAGGCTTTGCGTGAAATGCGTTACCGTAATCTGCGT TCTCGTAGTATTGATTAA Protein sequence : MANKPAQDGTVTVAQNRKAHHDYVIEDCYEAGLALTGTEVKSLREGRASLAESFVNIDRRGEMWLEGANIPEYLNGTWNN HAPKRKRKLLLHAAEIAKLSRQTEAKGYTVVPLRLYFKGSYVKVEIALARGKKEFDKRQALREEQDKREALREMRYRNLR SRSID |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | AET14351.1 | SsrA-binding protein | Not tested | SaPI68111 | Protein | 2e-31 | 52 |
| smpB | YP_001800894.1 | SsrA-binding protein | Not tested | Not named | Protein | 2e-31 | 51 |
| smpB | NP_230495.1 | SsrA-binding protein | Not tested | VPI-1 | Protein | 1e-18 | 42 |
