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Name : HMPREF0424_1059 (HMPREF0424_1059) Accession : YP_003374262.1 Strain : Gardnerella vaginalis 409-05 Genome accession: NC_013721 Putative virulence/resistance : Unknown Product : pyridoxal 5'-phosphate synthase, synthase subunit Pdx1 Function : - COG functional category : H : Coenzyme transport and metabolism COG ID : COG0214 EC number : - Position : 1206708 - 1207646 bp Length : 939 bp Strand : + Note : identified by match to protein family HMM PF01680; match to protein family HMM PF05690; match to protein family HMM TIGR00343 DNA sequence : ATGATGGCTGAGAACTTGAATACTACGGTAACTGTGAACGAATCCTCGGATCCGCAAAACAAAAGCGGCGAAGACCGTAC AGCATTGAACCGTCAACTGGCACAAATGCTTAAAGGCGGCGTGATTATGGACGTCACCACCCCAGAGCAGGCACGAATTG CTGAAGATTCTGGCGCATGCGCAGTTATGGCTTTGGAGCGTATTCCTGCCGATATTCGTGCAGCAGGCGGCGTTTCTCGT ATGAGCGACCCGGCTATGATTCACAGCATTCAAGAGGCTGTGTCTATTCCTGTTATGGCAAAATGCCGTATCGGTCACTT TGTTGAAGCACAAGTGCTTGAGGCTATCGAGATCGACTACATCGACGAAAGCGAAGTGCTTTCTCCAGCCGACGACGTGT ATCACATCAATAAGCGCGATTTTGCTGTGCCTTTCGTTTGCGGCGCTAAGGATTTGGGTGAAGCTTTGCGCAGAATCAAC GAAGGCGCTTCCATGATTCGCACTAAGGGCGAGCCTGGAACTGGTGACGTGATTCAAGCTGTGCGTCACATGCGTATGAT GAATTCCGCAATTCGTAAGCTTACAAGCATGCGCGAGGATGAGCTTTTTGAAGAAGCCAAAAATTTGCGCGTGCCTTTCG AACTCGTAAAATACGTTGCACAAAACGGCAAGCTCCCTGTTGTTAACTTCGCAGCCGGCGGCGTTGCTACCCCAGCCGAC GCTGCTTTAATGATGCAGCTTGGTGCCGAAGGCGTATTCGTTGGCTCCGGTATCTTTAAGTCTGGAGACCCGGCAAAGCG TGCTGCAGCAATCGTTAAAGCTGTAACTAATTACAAGGACGCCAAGATGATTGCTAAGCTTTCCGAAAACTTGGGCGAAG CTATGGTTGGCATTAACGAGCAGGAAATCAAGCTTTTAATGGCTGAGCGAGGCGAGTAA Protein sequence : MMAENLNTTVTVNESSDPQNKSGEDRTALNRQLAQMLKGGVIMDVTTPEQARIAEDSGACAVMALERIPADIRAAGGVSR MSDPAMIHSIQEAVSIPVMAKCRIGHFVEAQVLEAIEIDYIDESEVLSPADDVYHINKRDFAVPFVCGAKDLGEALRRIN EGASMIRTKGEPGTGDVIQAVRHMRMMNSAIRKLTSMREDELFEEAKNLRVPFELVKYVAQNGKLPVVNFAAGGVATPAD AALMMQLGAEGVFVGSGIFKSGDPAKRAAAIVKAVTNYKDAKMIAKLSENLGEAMVGINEQEIKLLMAERGE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| DIP0227 | NP_938620.1 | pyridoxal biosynthesis lyase PdxS | Not tested | Not named | Protein | 8e-87 | 70 |
| pdxS | YP_005137204.1 | pyridoxine biosynthesis protein | Not tested | Not named | Protein | 8e-87 | 70 |
| pdxS | YP_005141805.1 | pyridoxine biosynthesis protein | Not tested | Not named | Protein | 1e-86 | 70 |
