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Name : HMPREF0424_0103 (HMPREF0424_0103) Accession : YP_003373370.1 Strain : Gardnerella vaginalis 409-05 Genome accession: NC_013721 Putative virulence/resistance : Virulence Product : thiol-activated cytolysin Function : - COG functional category : - COG ID : - EC number : - Position : 121784 - 123334 bp Length : 1551 bp Strand : - Note : identified by match to protein family HMM PF01289 DNA sequence : ATGAAGAGCACAAAGTTCTACCGTAATGCAGCAATGTTGTTGCTCGCGGGCGCGACTATTATTCCACAATGCTTAGCAGT TCCAGCAATGGCAGATTCTTCTGCAAAGCCTTCTGCACCAGCTGCATCTTGTGCAGCTAGCAAGGACTCGCTGAACAACT ACTTGTGGGATTTGCATTACGATAAAACGAATATTCTCGCACGTCACGGCGAAACAATTAACAATAAATTCTCTAGCGAT AGCTTCAACAATAACGGTGAATTCGTTGTTGTTGAGCACCAGAAGAAGAACATCACAAATACAACATCAAACTTGTCGGT AACTTCGGCCAACAATGATCGCGTATATCCGGGTGCATTATTCCGCGCTGACCAGAATTTGATGGATAACATGCCAAGCT TGATTTCAGCAAATCGTGCTCCATTAACTTTGAGTATTGATTTGCCAGGCTTCCATGGCGGCGAGAGTGCTGTAACCGTG CAACATCCAACCAAGAGCTCCGTTACTTCAGCAGTTAACGGCTTAGTTTCTAAGTGGAATGCACAATATGCAGCAAGCCA TCATGTGGCAGCTCGTATGCAGTATGATTCCGCAAGCGCACAGAGCATGAACCAGCTCAAAGCTAAGTTTGGTGCTGATT TTGCAAAGATTGGCGTACCGCTGAAGATTGATTTCGATGCAGTACACAAGGGTGAGAAGCAGACTCAAATTGTGAACTTC AAGCAAACTTACTACACAGTAAGCGTTGACGCTCCAGATAGCCCAGCAGATTTCTTTGCTCCATGCACTACGCCAGAAAG CTTGAAGAACCGTGGCGTTGACAGCAAACGCCCACCAGTTTACGTATCAAACGTAGCTTATGGTCGCTCAATGTACGTAA AGTTCGATACCACCAGCAAGAGCACTGATTTCCAGGCTGCAGTAGAAGCAGCAATTAAGGGCGTAGACATCAAGCCAAAC ACCGAATTCCATCGCATTCTCCAGAATACCTCTGTTACTGCAGTGATTCTCGGCGGCAGCGCTAACGGTGCAGCAAAGGT TATTACCGGCAATATCGATACGCTAAAGGCTTTGATTCAGGAAGGTGCAAATTTGAGCACCTCTAGCCCAGCTGTTCCAA TCGCTTACACTACTTCCTTCGTAAAAGATAACGAAGTAGCAACTCTCCAGAGCAACAGCGATTATGTTGAGACTAAGGTT TCTGCTTACCGTGACGGTTATTTGACCTTGGATCATCGTGGGGCTTATGTAGCTCGCTACTACGTCTACTGGGATGAGTA CGGCACTGATATCGACGGAACTCCATACGTACGTTCTCGCGCTTGGGAAGGAAACGGCAAGTATCGTACCGCTCACTTCA GCACAACGATTCAGTTCAAGGGCAATGTGCGCAATCTTCGCATTAAGTTGGAAGAAAAGACCGGCTTAGTATGGGAACCA TGGCGCACAGTGTACAACCGTACTGATTTGCCGTTGGTTCGCCAGCGCACAATCAAGAACTGGGGTACAACTTTATGGCC TCGCGTCGCTGAAACTGTAAAGAATGACTGA Protein sequence : MKSTKFYRNAAMLLLAGATIIPQCLAVPAMADSSAKPSAPAASCAASKDSLNNYLWDLHYDKTNILARHGETINNKFSSD SFNNNGEFVVVEHQKKNITNTTSNLSVTSANNDRVYPGALFRADQNLMDNMPSLISANRAPLTLSIDLPGFHGGESAVTV QHPTKSSVTSAVNGLVSKWNAQYAASHHVAARMQYDSASAQSMNQLKAKFGADFAKIGVPLKIDFDAVHKGEKQTQIVNF KQTYYTVSVDAPDSPADFFAPCTTPESLKNRGVDSKRPPVYVSNVAYGRSMYVKFDTTSKSTDFQAAVEAAIKGVDIKPN TEFHRILQNTSVTAVILGGSANGAAKVITGNIDTLKALIQEGANLSTSSPAVPIAYTTSFVKDNEVATLQSNSDYVETKV SAYRDGYLTLDHRGAYVARYYVYWDEYGTDIDGTPYVRSRAWEGNGKYRTAHFSTTIQFKGNVRNLRIKLEEKTGLVWEP WRTVYNRTDLPLVRQRTIKNWGTTLWPRVAETVKND |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hly | AAA69525.1 | listeriolysin O | Virulence | LIPI-1 | Protein | 2e-95 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| HMPREF0424_0103 | YP_003373370.1 | thiol-activated cytolysin | VFG1363 | Protein | 5e-126 | 54 |
| HMPREF0424_0103 | YP_003373370.1 | thiol-activated cytolysin | VFG2275 | Protein | 3e-88 | 42 |
| HMPREF0424_0103 | YP_003373370.1 | thiol-activated cytolysin | VFG0074 | Protein | 2e-95 | 42 |
