Gene Information

Name : Psta_4675 (Psta_4675)
Accession : YP_003373177.1
Strain : Pirellula staleyi DSM 6068
Genome accession: NC_013720
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1121
EC number : -
Position : 6084876 - 6085652 bp
Length : 777 bp
Strand : +
Note : PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bsu:BSU30760 manganese ABC transporter ATP- binding protein

DNA sequence : 
ATGTCACCCGCCAAGCCTCCGGTTCTCGACATTCACGACGTCACGGTTGCCTATCATCGCAAGCCGGTGCTCTGGAACGT
CGACCTTGTGATGCCCGAGCCACAATTGGCGGCAATTGTCGGCCCTAATGGAGCGGGCAAAAGCACGCTGATCAAAGCAG
TGCTGGGACTCGTGCCGATGGCAGGTGGCAATGTGAAAGTGCTGGGTGAAGATGTGTCGCGCGTGCGTCAGCGCATCGGC
TATGTGCCACAGCGAGAAAGTGTCGACTGGGACTTTCCGGTCACCGTGCTCGATGTCGTGCTGATGGGAACCTACGGCCG
CTTAGGATGGCTCCGCCGCCCCGGAAATGCCGAGAAATCGTGGGCTCGCGAGTGCCTGGCTCGCGTGGGGCTGGCAAGTC
TCGAGCAGCAGCAAATCGGGCAACTCTCGGGGGGACAACAGCAGCGAGTGTTTCTCGCACGTGCTCTGGCGCAGCGGGCT
GATGTCTACTTTATGGACGAGCCGATGGCAGGGGTCGACGCCGCGACCGAGCGCATTATTTTCGAACTCCTGAGTGAACT
GCGCCGCGAGGGTCGCACCATCATTGCTGTCCATCACGACCTACGCAGTGTGCCACGCTATTTCGATTACGTCGTGCTGC
TGAACGTTCGCAAAGTCGCCTCGGGACCGATGAAAGAAACCTTCACCGACGACAACTTACGCAAGACTTATGGTGGCCGA
CTCGCGGTGCTCGATGCCGCCGCTGAAGCAATTGAGTCGCACGAGGCGCAGCGGTGA

Protein sequence : 
MSPAKPPVLDIHDVTVAYHRKPVLWNVDLVMPEPQLAAIVGPNGAGKSTLIKAVLGLVPMAGGNVKVLGEDVSRVRQRIG
YVPQRESVDWDFPVTVLDVVLMGTYGRLGWLRRPGNAEKSWARECLARVGLASLEQQQIGQLSGGQQQRVFLARALAQRA
DVYFMDEPMAGVDAATERIIFELLSELRREGRTIIAVHHDLRSVPRYFDYVVLLNVRKVASGPMKETFTDDNLRKTYGGR
LAVLDAAAEAIESHEAQR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitB NP_806465.1 iron ABC transporter ATP-binding protein Virulence SPI-1 Protein 2e-43 44
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 3e-44 44
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 1e-44 44
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 1e-44 44
sitB NP_457256.1 Iron transport protein, ATP-binding component Virulence SPI-1 Protein 2e-43 44
ef0093 AAM75296.1 EF0093 Not tested Not named Protein 2e-40 43
EF0575 NP_814340.1 cationic ABC transporter ATP-binding protein Not tested Not named Protein 2e-40 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Psta_4675 YP_003373177.1 ABC transporter BAC0400 Protein 1e-62 58
Psta_4675 YP_003373177.1 ABC transporter BAC0350 Protein 6e-45 44
Psta_4675 YP_003373177.1 ABC transporter BAC0440 Protein 9e-44 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Psta_4675 YP_003373177.1 ABC transporter VFG0526 Protein 6e-45 44